Non-Coding RNA Search

Ss1.1-rsug09_p17.5

Sequence:


               
               AGAAAATCAAGTCCTTTTTCCCAGAGACCTTGCTTAGATCAGGAAACTTAACAAGACTGG
TTAAGGGAGTATCCTGACTCCTGGGTCTGCCTGCTACCTGCAACCATTCCCCAATTTCTC
ACTACTGTCCACTGGTTAATTTATTCTAATCCCTTATCCAATCTGAAACTGGGGAAGTAC
TTGAGGCCTGGGTTTTCTGTCGTTCTCTCACTAAAGTGAATTCTTGAAAAATCAAGGCTA
GTATAATATCTGCCCTAGGCCTGAGTGTGGGTAGAGCACTGAAGACTGCCTTCCACCTGC
TGGTGAGGTGGATGAATGTTAAAGAGCTATAGGAACAAAACACAGAACTTGTACTCTCTA
ATCGTTTTCACTGATTAATAATATTCAATACCAAAGTATATAGTCCTAAGATTACTCCCT
AACCTGCCAGAATAAAAGCGTCAGGGCAGGCCATGGGTATTGCCTCTTTTTACCTATCAT
GTGGATTCTAACTATATTCCTGGGCCAAGGGCTGGACCACCTAACTTCCAGAGTCCTGGC
AGCTTTTGGAATGAAAGAAATACATAAGATTTATGAGATTGTTAAAGTGATGATCTGAGG
AGTTGCCTGGAATATATTTTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAATCAAGTCCTTTTTCCCAGAGACCTTGCTTAGATCAGGAAACTTAACAAGACTGG
TTAAGGGAGTATCCTGACTCCTGGGTCTGCCTGCTACCTGCAACCATTCCCCAATTTCTC
ACTACTGTCCACTGGTTAATTTATTCTAATCCCTTATCCAATCTGAAACTGGGGAAGTAC
TTGAGGCCTGGGTTTTCTGTCGTTCTCTCACTAAAGTGAATTCTTGAAAAATCAAGGCTA
GTATAATATCTGCCCTAGGCCTGAGTGTGGGTAGAGCACTGAAGACTGCCTTCCACCTGC
TGGTGAGGTGGATGAATGTTAAAGAGCTATAGGAACAAAACACAGAACTTGTACTCTCTA
ATCGTTTTCACTGATTAATAATATTCAATACCAAAGTATATAGTCCTAAGATTACTCCCT
AACCTGCCAGAATAAAAGCGTCAGGGCAGGCCATGGGTATTGCCTCTTTTTACCTATCAT
GTGGATTCTAACTATATTCCTGGGCCAAGGGCTGGACCACCTAACTTCCAGAGTCCTGGC
AGCTTTTGGAATGAAAGAAATACATAAGATTTATGAGATTGTTAAAGTGATGATCTGAGG
AGTTGCCTGGAATATATTTTGGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-187, - strand, RNAz p=0.534199

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-187, - strand, RNAz p=0.534199

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-624, gnl|bosTau2|chr10 (26627579-26626977)
               

               
               3-624, gnl|Hg17|chr15 (38815981-38815407)
               

               
               3-624, gnl|Mm7|chr2 (118878505-118877883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr10 (26627579-26626977)
               

               
               3-624, gnl|Hg17|chr15 (38815981-38815407)
               

               
               3-624, gnl|Mm7|chr2 (118878505-118877883)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	3-624, gnl\|bosTau2\|chr10 (26627579-26626977)
	3-624, gnl\|Hg17\|chr15 (38815981-38815407)
	3-624, gnl\|Mm7\|chr2 (118878505-118877883)