Non-Coding RNA Search

Ss1.1-rsug09_p5.5

Sequence:


               
               TAGAGTCTTTCATACCCTGTTTTACATTTTTCACGAATGTTCTACTTGATGCAGTTTCCA
TTGGAATGGGTGGAAGGTCCCGGTCTTTTTTATTTGCTAATAATGTGATCACAACTGAAC
TAGCAAAACCCACCTTTCCAGTCCCTCTCCTATAAAGTACAGTTTGGAATCTCATTCTGG
AAAAGATGGAATCGCATGGAGGTTCTCTAGATGTTAGGTAGAGACTAAATAAAAGTTCTC
AGTAGAGTCCTCTTTTGAGTAATTATAAGACCTCTTGTAGCTACAATGTTTTAGAGCATG
TTTCATCTTCATTTTTAATGTCTTGAACTGAATGGTAGTCTTTTTTAGATGAAGAACTGA
TGTCAGCCTGCCAGGTACTGTAATTTATTCTATCATATTATTTTATATATATATCTATAT
ATCTATATATCAAGTAGGACAGTGAAAATGTTTCCTTGCAAATTTGTAGACCAGTATCAG
TTACTTCCTGTTTTTATCCTTAAATGACCATTGCAAATCAGTGTAAGGGTTTTTCCAGTA
ATGACAGCACTTTCTTCAACCATTTAATAATCTTTCTGTGAAGAAACTTTGCTAAGTTAA
CCATAATATTCGTTGACCAGGTGGGATGTGAATGGAATATTAGAAACCTGTGAACTGAAG
TTCTGTGTTCACCATTGACACAGCCCTTATTTCAGAAGTCATAGTCCATATACTAAAAGT
AGGAATGACAGTGAGGCATTTATAAATTTTTGCAAAAGTGGGTCATTTTTTTTTTCTTTT
TCGTTTGAATATGATAGCAGGAAGAATTATAGCAGTCTGTCATTTTACCTGAAATGGGCA
AGCCTGTGTATTATGAGTACTTTCAAGCTTCCCTTTGGAATATACCAAGAAAGGCATTTG
GTGTTATCTTTGTTTTTCTATCGTTGTAAATTTAGATTTTGGAATTGGGTTTGGTGGTGT
GAAGCATTGCTCACAAGCGGCCAGAACTCCTCTTCCTGAAGGATTTTTGAGAATGAGGAA
TACATATTTAATCTCCCCTTTATGCCTTGGTTCTAGTTCCTCTTTCCAAGTTAAATAACA
AAAAAAAATTTTTTTTTGGTGGTTGTTTTAGTTGGTGCTCTGAAGCTTAATCTTCGTACC
TTTTACTCTCGATTGTCAAATTTTGATAAAACGTGCCATTTTCTTTGGTAAGAAAAAGCA
GGTCTTCACGTCTGCCAGAACACAATTTATATACCTTATTGGCTCCATTAAACTTTTTAA
AAACGTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGTCTTTCATACCCTGTTTTACATTTTTCACGAATGTTCTACTTGATGCAGTTTCCA
TTGGAATGGGTGGAAGGTCCCGGTCTTTTTTATTTGCTAATAATGTGATCACAACTGAAC
TAGCAAAACCCACCTTTCCAGTCCCTCTCCTATAAAGTACAGTTTGGAATCTCATTCTGG
AAAAGATGGAATCGCATGGAGGTTCTCTAGATGTTAGGTAGAGACTAAATAAAAGTTCTC
AGTAGAGTCCTCTTTTGAGTAATTATAAGACCTCTTGTAGCTACAATGTTTTAGAGCATG
TTTCATCTTCATTTTTAATGTCTTGAACTGAATGGTAGTCTTTTTTAGATGAAGAACTGA
TGTCAGCCTGCCAGGTACTGTAATTTATTCTATCATATTATTTTATATATATATCTATAT
ATCTATATATCAAGTAGGACAGTGAAAATGTTTCCTTGCAAATTTGTAGACCAGTATCAG
TTACTTCCTGTTTTTATCCTTAAATGACCATTGCAAATCAGTGTAAGGGTTTTTCCAGTA
ATGACAGCACTTTCTTCAACCATTTAATAATCTTTCTGTGAAGAAACTTTGCTAAGTTAA
CCATAATATTCGTTGACCAGGTGGGATGTGAATGGAATATTAGAAACCTGTGAACTGAAG
TTCTGTGTTCACCATTGACACAGCCCTTATTTCAGAAGTCATAGTCCATATACTAAAAGT
AGGAATGACAGTGAGGCATTTATAAATTTTTGCAAAAGTGGGTCATTTTTTTTTTCTTTT
TCGTTTGAATATGATAGCAGGAAGAATTATAGCAGTCTGTCATTTTACCTGAAATGGGCA
AGCCTGTGTATTATGAGTACTTTCAAGCTTCCCTTTGGAATATACCAAGAAAGGCATTTG
GTGTTATCTTTGTTTTTCTATCGTTGTAAATTTAGATTTTGGAATTGGGTTTGGTGGTGT
GAAGCATTGCTCACAAGCGGCCAGAACTCCTCTTCCTGAAGGATTTTTGAGAATGAGGAA
TACATATTTAATCTCCCCTTTATGCCTTGGTTCTAGTTCCTCTTTCCAAGTTAAATAACA
AAAAAAAATTTTTTTTTGGTGGTTGTTTTAGTTGGTGCTCTGAAGCTTAATCTTCGTACC
TTTTACTCTCGATTGTCAAATTTTGATAAAACGTGCCATTTTCTTTGGTAAGAAAAAGCA
GGTCTTCACGTCTGCCAGAACACAATTTATATACCTTATTGGCTCCATTAAACTTTTTAA
AAACGTTAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-1269, gnl|bosTau2|chr25 (8031537-8030308)
               

               
               4-1269, gnl|Hg17|chr16 (9119171-9120436)
               

               
               4-1269, gnl|Mm7|chr16 (8529346-8530579)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1269, gnl|bosTau2|chr25 (8031537-8030308)
               

               
               4-1269, gnl|Hg17|chr16 (9119171-9120436)
               

               
               4-1269, gnl|Mm7|chr16 (8529346-8530579)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	4-1269, gnl\|bosTau2\|chr25 (8031537-8030308)
	4-1269, gnl\|Hg17\|chr16 (9119171-9120436)
	4-1269, gnl\|Mm7\|chr16 (8529346-8530579)

	tra (0.369276)
	cte (0.29274)
	liv (0.292569)
	cbe (0.239234)
	tes (0.207814)
	sag (0.182715)
	mgm (0.180343)
	lun (0.150489)
	lin (0.145603)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	spc (0.113366)