Non-Coding RNA Search

Ss1.1-rsug10_p15.5

Sequence:


               
               ACCCAGCCGGGGTCGGGGCAACAGCAGGGACCCTCGGAGGCGGGGCCAGTGGGACCGCGA
TGGGCGTGGAGATCGAGACCATTTCCCCGGGAGACGGAAGGACATTCCCCAAGAAGGGCC
AGACGTGTGTGGCGGGAGACGGAAGAATGCTCCAAAATGGGAAGAAATTTGATTCCTCCA
GAGACAGAAACATGCTCCAAAATGGGAAGAAATTTGATTCCTCCAGAGACAGAAACAAAC
CTTTCAAGTTCAGAATCGGCAAACAGGAAGTCATCAAAGGTTTTGAAGAGGGTGCAGCCC
AGATGAGCTTGGGGCAGAGGGCGAAGCTGACCTGCACCCCTGATGTGGCGTATGGAGCCA
CGGGCCACCCTGGTGTCATCCCTCCCAATGCCACCCTCATCTTTGACGTGGAGCTGCTCA
ACTTAGAGTGAAGGCAGGAAGGAACGCAAGGTGGCTGGAGATGGCTGCTGCTCACCCTCC
TTAGCCTGCTCTGCCACTGGGACGGCTCCTCCTGCTTGGGGCTCTTGATCAGTGCGCTAA
CCTCACGGCCCCACGGCATTATCCATTCTCTCTGCCCAAGTTGCTCTGTATGTGTTCTGT
CATTGTTCACGTGCATCTTTGCTTGAGGAAACTTTGGTTGCAGATTGAAATGTTTCAGGT
TGTGCATTTTGCGTGATGCATGTAGTAGCCATTCCTGATCACAGAACAGATTTTGTGTCC
GCACAATCTACACTGCCTTACCTTTACTTAAGCCAGACACACAAGGTGCTCAGACATGAG
ATGTACATGATGTACACAGAGGGACTTGAGCCAGTTACCTTTGCTGTCACTTTCTTGGAA
ATTCTGCTGACTTAAACAATGTCCTCTTTGGAAACGATATGTAAAATAAAAGCTCTGTGC
TTGTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCAGCCGGGGTCGGGGCAACAGCAGGGACCCTCGGAGGCGGGGCCAGTGGGACCGCGA
TGGGCGTGGAGATCGAGACCATTTCCCCGGGAGACGGAAGGACATTCCCCAAGAAGGGCC
AGACGTGTGTGGCGGGAGACGGAAGAATGCTCCAAAATGGGAAGAAATTTGATTCCTCCA
GAGACAGAAACATGCTCCAAAATGGGAAGAAATTTGATTCCTCCAGAGACAGAAACAAAC
CTTTCAAGTTCAGAATCGGCAAACAGGAAGTCATCAAAGGTTTTGAAGAGGGTGCAGCCC
AGATGAGCTTGGGGCAGAGGGCGAAGCTGACCTGCACCCCTGATGTGGCGTATGGAGCCA
CGGGCCACCCTGGTGTCATCCCTCCCAATGCCACCCTCATCTTTGACGTGGAGCTGCTCA
ACTTAGAGTGAAGGCAGGAAGGAACGCAAGGTGGCTGGAGATGGCTGCTGCTCACCCTCC
TTAGCCTGCTCTGCCACTGGGACGGCTCCTCCTGCTTGGGGCTCTTGATCAGTGCGCTAA
CCTCACGGCCCCACGGCATTATCCATTCTCTCTGCCCAAGTTGCTCTGTATGTGTTCTGT
CATTGTTCACGTGCATCTTTGCTTGAGGAAACTTTGGTTGCAGATTGAAATGTTTCAGGT
TGTGCATTTTGCGTGATGCATGTAGTAGCCATTCCTGATCACAGAACAGATTTTGTGTCC
GCACAATCTACACTGCCTTACCTTTACTTAAGCCAGACACACAAGGTGCTCAGACATGAG
ATGTACATGATGTACACAGAGGGACTTGAGCCAGTTACCTTTGCTGTCACTTTCTTGGAA
ATTCTGCTGACTTAAACAATGTCCTCTTTGGAAACGATATGTAAAATAAAAGCTCTGTGC
TTGTCAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|627733|pir||A53924

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|627733|pir||A53924

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               340-459, - strand, RNAz p=0.973967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-459, - strand, RNAz p=0.973967

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               55-192, gnl|bosTau2|chr11 (24226540-24226677)
               

               
               55-192, gnl|Hg17|chr6 (63979416-63979553)
               

               
               55-192, gnl|Mm7|chr14 (71317219-71317082)
               


               
               301-908, gnl|bosTau2|chr11 (56335086-56334476)
               

               
               301-908, gnl|Hg17|chr2 (24197583-24198202)
               

               
               301-908, gnl|Mm7|chr12 (4773995-4773382)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-192, gnl|bosTau2|chr11 (24226540-24226677)
               

               
               55-192, gnl|Hg17|chr6 (63979416-63979553)
               

               
               55-192, gnl|Mm7|chr14 (71317219-71317082)
               


               
               301-908, gnl|bosTau2|chr11 (56335086-56334476)
               

               
               301-908, gnl|Hg17|chr2 (24197583-24198202)
               

               
               301-908, gnl|Mm7|chr12 (4773995-4773382)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	55-192, gnl\|bosTau2\|chr11 (24226540-24226677)
	55-192, gnl\|Hg17\|chr6 (63979416-63979553)
	55-192, gnl\|Mm7\|chr14 (71317219-71317082)

	301-908, gnl\|bosTau2\|chr11 (56335086-56334476)
	301-908, gnl\|Hg17\|chr2 (24197583-24198202)
	301-908, gnl\|Mm7\|chr12 (4773995-4773382)

	fbs (0.175346)
	fhi (0.169578)
	cli (0.152812)
	hyp (0.142837)
	sug (0.127291)
	ecc (0.115035)