Non-Coding RNA Search

Ss1.1-rsug11_i19.5.112

Sequence:


               
               CGTCGCCGCGGAGCCCGTGCCGTCCTTCAGCCAAGATGCCCGAGGAAACCCAGACCCAAG
ACCAGCCGATGGAGGAGGAGGAGGTGGAGACGTTCGCCTTCCAGGCGGAAATCGCCCAGT
TGATGTCGTTGATCATCAACACTTTCTACTCGAACAAGGAGATCTTTCTGAGGGAGCTCA
TTTCCAACTCGTCCGATGCTTTGGACAAGATCAGATACGAAAGCCTGACGGATCCCAGTA
AACTAGACTCCGGGAAAGAGCTGCACATTAATCTCATTCCGAACAAGCAAGACCGGACCC
TCACGATAGTGGACACCGGCATCGGCATGACCAAGGCCGACTTGATCAATAACCTTGGTA
CGATCGCCAAGTCTGGGACCAAGGCGTTCATGGAGGCTTTGCAGGCCGGTGCCGATATCT
CGATGATTGGCCAGTTCGGTGTCGGCTTCTACTCTGCGTACCTGGTCGCTGAGAAAGTGA
CCGTTATCACCAAACACAACGATGACGAGCAGTATGCCTGGGAGTCTTCTGCAGGAGGAT
CTTTCACCGTTAGGACAGACACAGGAGAACCTATGGGTCGTGGAACAAAGGTTATTCTAC
ATCTGAAAGAAGACCAAACTGAGTACTTGGAAGAAAGGAGAATAAAGGAGATTGTGAAGA
AACACTCTCAGTTTATTGGCTACCCCATTACTCTCTTCGTGGAGAAGGAACGTGATAAAG
AAGTCAGTGACGACGAGGCGGAAGAAAAGGAAGACAAAGAGGAAGAAAAGGAGAAAGAAG
AGAAGGAATCTGAGGATAAACCGGAGATAGAAGATGTTGGTTCTGATGAAGAGGAAGAAG
AAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGATCAAGGAGAAGTATATTGATCAAG
AGGAACTCAACAAGACAAAGCCTATCTGGACCAGAAACCCCGATGACATCACTAATGAAG
AGTACGGGGAGTTCTATAAGAGCTTGACCAATGACTGGGAGGATCACTTGGCTGTGAAGC
ACTTTTCAGTCGAAGGGCAGTTGGAGTTCAGAGCCCTTCTTTTCGTCCCAAGACGCGCTC
CTTTCGACTTATTTGAAAACAGAAAGAAGAAGAACAACATCAAGCTGTATGTTCGCAGAG
TGTTCATCATGGACAACTGCGAGGAGCTCATCCCTGAGTATCTGAATTTCATTAGAGGCG
TGGTGGACTCTGAGGATCTTCCTCTGAACATTTCTCGTGAGATGTTGCAACAAAGCAAAA
TTTTGAAAGTCATCAGGAAGAATCTGGTCAAGAAATGCTTGGAGCTCTTTACTGAATTGG
CCGAAGATAAAGAGAATTACAAGAAGTTCTATGAGCAGTTCTCTAAAAATATTAAGCTTG
GAATACATGAAGATTCTCAAAATCGGAAGAAGCTTTCCGAGCTGTTGAGGTACTACACTT
CTGCTTCTGGCGACGAGATGGTTTCCCTCAAGGACTATTGCACCAGAATGAAGGAGAACC
AGAAACACATCTATTACATCACAGGTGAGACCAAGGACCAGGTGGCCAACTCGGCCTTCG
TGGAACGTCTGCGGAAGCACGGCCTGGAGGTGATCTACATGATCGAGCCCATCGATGAGT
ACTGTGTGCAGCAGCTGAAGGAGTTTGAGGGGAAGACCTTAGTGTCAGTCACCAAAGAGG
GCCTGGAGCTCCCGGAAGATGAAGAGGAGAAGAAGAAACAGGAGGAGAAGAAGACAAAGT
TTGAAAACCTCTGCAAGATCATGAAGGACATCTTGGAGAAGAAAGTCGAAAAGGTGGTTG
TGTCGAACCGGTTGGTGACCTCACCGTGCTGCATTGTCACAAGCACATACGGCTGGACAG
CAAACATGGAGAGAATCATGAAGGCTCAAGCCCTGAGAGACAACTCGACAATGGGTTACA
TGGCAGCAAAGAAGCACCTGGAGATAAATCCAGACCATTCCATCATCGAGACCCTGAGGC
AAAAGGCAGAGGCGGACAAGAACGACAAGTCCGTGAAGGATCTGGTCATCCTGCTGTACG
AAACCGCTCTGCTGTCTTCTGGCTTCAGCCTGGAAGATCCCCAGACGCACGCCAACAGGA
TCTACAGGATGATCAAACTTGGTCTTGGTATTGATGAGGACGACCCCACCGCCGACGACA
GCAGCGCTGCTGTGACGGAGGAGATGCCACCCCTGGAAGGGGACGACGACACGTCCCGCA
TGGAGGAAGTCGATTAGGCTCCGCCTGAGGCTTGCTTGTCCCCTGTTAAAACGCTGTCTG
CATTCCCTCTGACGATATATTTTCAAGTATTTTATTTTTGTTAACATTTAAAGGTTGTAT
GGCATGACAGTTCCTTAAGGGAAAATAAGATTCCTTTGTACTAAGTGTGACACTGTGACA
TTTGAGCACTAAAGCCGAGCTTGTCCTTTCCTAGTTCCAGTTGGCTTCTTTAACAGACGG
CCCTCGTGCTGTGAGGTGTGTGTACCCTGATGTTAACTTCTTGGTCTGTGTTCAGCTCTC
AAGCGGATTCCTTAGTTGACCACCTTTTGTCACTGAAGTGTTGTGGAGTATATCTTGATG
TTTAGGAGAAAAATACTTGTTCAAGCAACGAGTAGATTTGGGCTCTACCTTTGAAACCTC
CCATCCCCTGTAGCTGTTGACTGCATGTATCAGTCCTCTAGGAGTTAGGATGAACCCCGT
TGATGGGAGTAGCTATCCTTAGGGCTTGTTTCCAAAGAAATGTAATGTTTAGGGACCCGA
AGTCAAAAGCCCACCTAGGCATGTGGTAAAGCTGTTTGAGAAGTAACTCTGCAAGCGTCG
TGAGTGGAGATGTAGCGCCGAAGTCGCATTCTGCTTCCGGAGTTGAAACAAATACAGATG
AATTAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCGCCGCGGAGCCCGTGCCGTCCTTCAGCCAAGATGCCCGAGGAAACCCAGACCCAAG
ACCAGCCGATGGAGGAGGAGGAGGTGGAGACGTTCGCCTTCCAGGCGGAAATCGCCCAGT
TGATGTCGTTGATCATCAACACTTTCTACTCGAACAAGGAGATCTTTCTGAGGGAGCTCA
TTTCCAACTCGTCCGATGCTTTGGACAAGATCAGATACGAAAGCCTGACGGATCCCAGTA
AACTAGACTCCGGGAAAGAGCTGCACATTAATCTCATTCCGAACAAGCAAGACCGGACCC
TCACGATAGTGGACACCGGCATCGGCATGACCAAGGCCGACTTGATCAATAACCTTGGTA
CGATCGCCAAGTCTGGGACCAAGGCGTTCATGGAGGCTTTGCAGGCCGGTGCCGATATCT
CGATGATTGGCCAGTTCGGTGTCGGCTTCTACTCTGCGTACCTGGTCGCTGAGAAAGTGA
CCGTTATCACCAAACACAACGATGACGAGCAGTATGCCTGGGAGTCTTCTGCAGGAGGAT
CTTTCACCGTTAGGACAGACACAGGAGAACCTATGGGTCGTGGAACAAAGGTTATTCTAC
ATCTGAAAGAAGACCAAACTGAGTACTTGGAAGAAAGGAGAATAAAGGAGATTGTGAAGA
AACACTCTCAGTTTATTGGCTACCCCATTACTCTCTTCGTGGAGAAGGAACGTGATAAAG
AAGTCAGTGACGACGAGGCGGAAGAAAAGGAAGACAAAGAGGAAGAAAAGGAGAAAGAAG
AGAAGGAATCTGAGGATAAACCGGAGATAGAAGATGTTGGTTCTGATGAAGAGGAAGAAG
AAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGATCAAGGAGAAGTATATTGATCAAG
AGGAACTCAACAAGACAAAGCCTATCTGGACCAGAAACCCCGATGACATCACTAATGAAG
AGTACGGGGAGTTCTATAAGAGCTTGACCAATGACTGGGAGGATCACTTGGCTGTGAAGC
ACTTTTCAGTCGAAGGGCAGTTGGAGTTCAGAGCCCTTCTTTTCGTCCCAAGACGCGCTC
CTTTCGACTTATTTGAAAACAGAAAGAAGAAGAACAACATCAAGCTGTATGTTCGCAGAG
TGTTCATCATGGACAACTGCGAGGAGCTCATCCCTGAGTATCTGAATTTCATTAGAGGCG
TGGTGGACTCTGAGGATCTTCCTCTGAACATTTCTCGTGAGATGTTGCAACAAAGCAAAA
TTTTGAAAGTCATCAGGAAGAATCTGGTCAAGAAATGCTTGGAGCTCTTTACTGAATTGG
CCGAAGATAAAGAGAATTACAAGAAGTTCTATGAGCAGTTCTCTAAAAATATTAAGCTTG
GAATACATGAAGATTCTCAAAATCGGAAGAAGCTTTCCGAGCTGTTGAGGTACTACACTT
CTGCTTCTGGCGACGAGATGGTTTCCCTCAAGGACTATTGCACCAGAATGAAGGAGAACC
AGAAACACATCTATTACATCACAGGTGAGACCAAGGACCAGGTGGCCAACTCGGCCTTCG
TGGAACGTCTGCGGAAGCACGGCCTGGAGGTGATCTACATGATCGAGCCCATCGATGAGT
ACTGTGTGCAGCAGCTGAAGGAGTTTGAGGGGAAGACCTTAGTGTCAGTCACCAAAGAGG
GCCTGGAGCTCCCGGAAGATGAAGAGGAGAAGAAGAAACAGGAGGAGAAGAAGACAAAGT
TTGAAAACCTCTGCAAGATCATGAAGGACATCTTGGAGAAGAAAGTCGAAAAGGTGGTTG
TGTCGAACCGGTTGGTGACCTCACCGTGCTGCATTGTCACAAGCACATACGGCTGGACAG
CAAACATGGAGAGAATCATGAAGGCTCAAGCCCTGAGAGACAACTCGACAATGGGTTACA
TGGCAGCAAAGAAGCACCTGGAGATAAATCCAGACCATTCCATCATCGAGACCCTGAGGC
AAAAGGCAGAGGCGGACAAGAACGACAAGTCCGTGAAGGATCTGGTCATCCTGCTGTACG
AAACCGCTCTGCTGTCTTCTGGCTTCAGCCTGGAAGATCCCCAGACGCACGCCAACAGGA
TCTACAGGATGATCAAACTTGGTCTTGGTATTGATGAGGACGACCCCACCGCCGACGACA
GCAGCGCTGCTGTGACGGAGGAGATGCCACCCCTGGAAGGGGACGACGACACGTCCCGCA
TGGAGGAAGTCGATTAGGCTCCGCCTGAGGCTTGCTTGTCCCCTGTTAAAACGCTGTCTG
CATTCCCTCTGACGATATATTTTCAAGTATTTTATTTTTGTTAACATTTAAAGGTTGTAT
GGCATGACAGTTCCTTAAGGGAAAATAAGATTCCTTTGTACTAAGTGTGACACTGTGACA
TTTGAGCACTAAAGCCGAGCTTGTCCTTTCCTAGTTCCAGTTGGCTTCTTTAACAGACGG
CCCTCGTGCTGTGAGGTGTGTGTACCCTGATGTTAACTTCTTGGTCTGTGTTCAGCTCTC
AAGCGGATTCCTTAGTTGACCACCTTTTGTCACTGAAGTGTTGTGGAGTATATCTTGATG
TTTAGGAGAAAAATACTTGTTCAAGCAACGAGTAGATTTGGGCTCTACCTTTGAAACCTC
CCATCCCCTGTAGCTGTTGACTGCATGTATCAGTCCTCTAGGAGTTAGGATGAACCCCGT
TGATGGGAGTAGCTATCCTTAGGGCTTGTTTCCAAAGAAATGTAATGTTTAGGGACCCGA
AGTCAAAAGCCCACCTAGGCATGTGGTAAAGCTGTTTGAGAAGTAACTCTGCAAGCGTCG
TGAGTGGAGATGTAGCGCCGAAGTCGCATTCTGCTTCCGGAGTTGAAACAAATACAGATG
AATTAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               HS90A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HS90A_PIG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               159-278, - strand, RNAz p=0.678409
               

               
               1319-1416, - strand, RNAz p=0.969683
               

               
               1598-1757, - strand, RNAz p=0.846947
               

               
               1878-2117, - strand, RNAz p=0.821193

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.678409
               

               
               1319-1416, - strand, RNAz p=0.969683
               

               
               1598-1757, - strand, RNAz p=0.846947
               

               
               1878-2117, - strand, RNAz p=0.821193

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-2900, gnl|bosTau2|chr12 (33773262-33770324)
               

               
               1-2900, gnl|Hg17|chr11 (27869191-27866285)
               

               
               1-2900, gnl|Mm7|chr11 (77375039-77377992)
               


               
               2419-2679, gnl|bosTau2|chr10 (68824221-68823947)
               

               
               2419-2679, gnl|Hg17|chr11 (27866770-27866509)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2900, gnl|bosTau2|chr12 (33773262-33770324)
               

               
               1-2900, gnl|Hg17|chr11 (27869191-27866285)
               

               
               1-2900, gnl|Mm7|chr11 (77375039-77377992)
               


               
               2419-2679, gnl|bosTau2|chr10 (68824221-68823947)
               

               
               2419-2679, gnl|Hg17|chr11 (27866770-27866509)

Expressed library(ies): 69 entry(ies)

More info

Expressed library(ies): 69 entry(ies)

Help | Less info


               
               tra (2.95421)
               

               
               pro (2.56016)
               

               
               spc (2.38068)
               

               
               hyp (2.28539)
               

               
               sug (2.16395)
               

               
               tes (2.07814)
               

               
               fhi (1.86536)
               

               
               bla (1.86521)
               

               
               ova (1.54959)
               

               
               fcc (1.38449)
               

               
               lyg (1.19792)
               

               
               cbe (1.19617)
               

               
               liv (1.17027)
               

               
               spl (1.14548)
               

               
               ssp (1.08416)
               

               
               gul (1.06553)
               

               
               aor (0.976372)
               

               
               ldo (0.873024)
               

               
               cut (0.849618)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               elu (0.770713)
               

               
               thg (0.760746)
               

               
               vin (0.665115)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               fat (0.58971)
               

               
               ste (0.540833)
               

               
               nmm (0.531209)
               

               
               kid (0.518941)
               

               
               ece (0.45861)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 69 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (2.95421)
               

               
               pro (2.56016)
               

               
               spc (2.38068)
               

               
               hyp (2.28539)
               

               
               sug (2.16395)
               

               
               tes (2.07814)
               

               
               fhi (1.86536)
               

               
               bla (1.86521)
               

               
               ova (1.54959)
               

               
               fcc (1.38449)
               

               
               lyg (1.19792)
               

               
               cbe (1.19617)
               

               
               liv (1.17027)
               

               
               spl (1.14548)
               

               
               ssp (1.08416)
               

               
               gul (1.06553)
               

               
               aor (0.976372)
               

               
               ldo (0.873024)
               

               
               cut (0.849618)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               elu (0.770713)
               

               
               thg (0.760746)
               

               
               vin (0.665115)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               fat (0.58971)
               

               
               ste (0.540833)
               

               
               nmm (0.531209)
               

               
               kid (0.518941)
               

               
               ece (0.45861)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               pgl (0.35545)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	159-278, - strand, RNAz p=0.678409
	1319-1416, - strand, RNAz p=0.969683
	1598-1757, - strand, RNAz p=0.846947
	1878-2117, - strand, RNAz p=0.821193

	1-2900, gnl\|bosTau2\|chr12 (33773262-33770324)
	1-2900, gnl\|Hg17\|chr11 (27869191-27866285)
	1-2900, gnl\|Mm7\|chr11 (77375039-77377992)

	2419-2679, gnl\|bosTau2\|chr10 (68824221-68823947)
	2419-2679, gnl\|Hg17\|chr11 (27866770-27866509)

	tra (2.95421)
	pro (2.56016)
	spc (2.38068)
	hyp (2.28539)
	sug (2.16395)
	tes (2.07814)
	fhi (1.86536)
	bla (1.86521)
	ova (1.54959)
	fcc (1.38449)
	lyg (1.19792)
	cbe (1.19617)
	liv (1.17027)
	spl (1.14548)
	ssp (1.08416)
	gul (1.06553)
	aor (0.976372)
	ldo (0.873024)
	cut (0.849618)
	ebs (0.828108)
	fce (0.814775)
	ecc (0.805246)
	elu (0.770713)
	thg (0.760746)
	vin (0.665115)
	hea (0.613497)
	sme (0.610874)
	fat (0.58971)
	ste (0.540833)
	nmm (0.531209)
	kid (0.518941)
	ece (0.45861)
	ski (0.440205)
	lin (0.436808)
	ret (0.3862)
	sag (0.36543)
	sto (0.359648)
	clu (0.358938)
	pgl (0.35545)
	fty (0.351679)
	sin (0.349895)
	med (0.348756)
	rec (0.346141)
	jca (0.34188)
	eye (0.341006)
	tbr (0.308356)
	eli (0.303628)
	lun (0.300978)
	isp (0.300752)
	bfe (0.299715)
	eje (0.296501)
	pty (0.285429)
	lnt (0.284616)
	pan (0.23596)
	mgp (0.230681)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	fco (0.157208)
	cag (0.151194)
	hlv (0.139256)
	ute (0.132784)
	ese (0.126502)
	eru (0.120048)
	jej (0.0989218)