Non-Coding RNA Search

Ss1.1-rsug12_e5.5

Sequence:


               
               GATAGATTTCCTCCGAGCCGGCAGCGCCCCACACCCTGCTCACTTCTCTACAAAGGTATG
AATGGAATGGCTTTTCTAGAAAGGGCTTCCGTGAACATAAAGGAATTCCTTTCCCTGGGA
GGCCCAGTGGCGGCAGGGCCAAGCCAGTCTTGAACTGGGCTTATTTCTCAAATCCATCTG
ATCAGGCATTTTTGTTGGCATGCTAGCGCCCACTCTAACTTTCTTCATTTTTTTGTGAAA
GATGGACATATTTATTAAAATGCTTCCTCTTCCTCCTGCAGAGCCCATAGACGTCAAGAA
ATGATACCCCAGCTTAAATGTACGGGCTAAAAGATGAAGTAACAATATTAGGTTGCCATG
GTAACTGCTCTTAACTTTGCCTGGAGCTCCTGGCTGCCTGGAAGCCCAGTGGCATAGGGC
GCGTTCTAGTCTATGAAAACTGATGAGTGTTTGGGCAGGGATGTTTTTCTAGTTCTCATT
TTAGTTTTCAAGTACATATACGCTCAGCATTAAGCCTATTTATTTGTACATCTATAATGG
TCTTCTTTCCTAACAGTAACCTTTGATATTAAACTGCTCTGAAAGCCTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCCTTTTAAAATTTT
CCGGGGGGGGGCCAATTTTTCCCCCCCCCCTTTTTTTTTAAAAAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAGATTTCCTCCGAGCCGGCAGCGCCCCACACCCTGCTCACTTCTCTACAAAGGTATG
AATGGAATGGCTTTTCTAGAAAGGGCTTCCGTGAACATAAAGGAATTCCTTTCCCTGGGA
GGCCCAGTGGCGGCAGGGCCAAGCCAGTCTTGAACTGGGCTTATTTCTCAAATCCATCTG
ATCAGGCATTTTTGTTGGCATGCTAGCGCCCACTCTAACTTTCTTCATTTTTTTGTGAAA
GATGGACATATTTATTAAAATGCTTCCTCTTCCTCCTGCAGAGCCCATAGACGTCAAGAA
ATGATACCCCAGCTTAAATGTACGGGCTAAAAGATGAAGTAACAATATTAGGTTGCCATG
GTAACTGCTCTTAACTTTGCCTGGAGCTCCTGGCTGCCTGGAAGCCCAGTGGCATAGGGC
GCGTTCTAGTCTATGAAAACTGATGAGTGTTTGGGCAGGGATGTTTTTCTAGTTCTCATT
TTAGTTTTCAAGTACATATACGCTCAGCATTAAGCCTATTTATTTGTACATCTATAATGG
TCTTCTTTCCTAACAGTAACCTTTGATATTAAACTGCTCTGAAAGCCTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCCTTTTAAAATTTT
CCGGGGGGGGGCCAATTTTTCCCCCCCCCCTTTTTTTTTAAAAAAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-199, + strand, RNAz p=0.769939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-199, + strand, RNAz p=0.769939

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-585, gnl|bosTau2|chr1 (96814774-96814184)
               

               
               4-585, gnl|Hg17|chr21 (37044622-37044024)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-585, gnl|bosTau2|chr1 (96814774-96814184)
               

               
               4-585, gnl|Hg17|chr21 (37044622-37044024)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sto (0.179824)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	4-585, gnl\|bosTau2\|chr1 (96814774-96814184)
	4-585, gnl\|Hg17\|chr21 (37044622-37044024)