Ss1.1-rsug12_e6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGAAGAAGGGCCAGACCCTGGCCTTGGTGGGCAGCAGCGGCTGTGGGAAGAGCACGGT GGTCCAGCTCCTGGAGCGGTTCTACGACCCCTTGGCTGGAAAAGTGCTAATTGACGGCAG GGAGATTAAAAAACTGAACGTCCAGTGGCTCCGAGCACACATGGGCATCGTGTCCCAGGA GCCCATCCTGTTTGACTGCAGCATTGCTGAGAACATCGCCTATGGGGACAACAGCCGGGT CGTGTCCCAGGAGGAGATCGTGCAGGCGGCCAAGGAGGCCAACATCCACCCCTTCATCGA GACACTGCCTGATAAATATAACACCAGAGTGGGAGACAAAGGAACGCAGCTCTCTGGCGG CCAGAAACAGCGCATTGCAATAGCTCGTGCCCTTGTCAGACGGCCTCGTATCTTGCTTCT GGATGAAGCTACATCGGCTCTGGATACACAAAGTGAAAAGGTTGTCCAAGAAGCCCTGGA CAAAGCCAGAGAAGGCCGCACCTGCATCGTGATCGCTCACCGCCTGTCCACCATCCAGAA CGCAGACTTGATCGTGGTGATTCAGAACGGCAAAGTCCAGGAGTATGGCACACACCAGCA GCTACTGGCACAGAAAGGCATCTATTTCTCCATGGTCAGCGTCCAGGCTGGAGCAAAGCG CTCATCAACTGTGACCATGTGAATTGTTATATGTTGTCTAATATTTGTGTTAAAATCTGG GCATTTAATCAAAATTTTAAAAGTGAACACTTACTGGAAAAACTTTCTAGAGTTACTTGT TTAACATTTCCTGCTACCATTGAAGATCATTCCACCAAGTTCAGATTCTTCAGAGACTTT ATAATTGAAGGAAAAGAAATAAATATCATCAAGTGGAGTAACATAATGGCTTTAATTGCA TTATAAAATTAATAGAATAATTCAAAGTAGATTTGTTAATAAAGTTTATAATTTTTATTT ATATTTTCTTATTCACACTGTAACTGACTACTTGCTAAAAGATTAAAAGTAGCAAAAAGT ACTGAATGTTTGCATAAAGTACCCATAATAAAACTAAACTTTTATATGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGAAGAAGGGCCAGACCCTGGCCTTGGTGGGCAGCAGCGGCTGTGGGAAGAGCACGGT GGTCCAGCTCCTGGAGCGGTTCTACGACCCCTTGGCTGGAAAAGTGCTAATTGACGGCAG GGAGATTAAAAAACTGAACGTCCAGTGGCTCCGAGCACACATGGGCATCGTGTCCCAGGA GCCCATCCTGTTTGACTGCAGCATTGCTGAGAACATCGCCTATGGGGACAACAGCCGGGT CGTGTCCCAGGAGGAGATCGTGCAGGCGGCCAAGGAGGCCAACATCCACCCCTTCATCGA GACACTGCCTGATAAATATAACACCAGAGTGGGAGACAAAGGAACGCAGCTCTCTGGCGG CCAGAAACAGCGCATTGCAATAGCTCGTGCCCTTGTCAGACGGCCTCGTATCTTGCTTCT GGATGAAGCTACATCGGCTCTGGATACACAAAGTGAAAAGGTTGTCCAAGAAGCCCTGGA CAAAGCCAGAGAAGGCCGCACCTGCATCGTGATCGCTCACCGCCTGTCCACCATCCAGAA CGCAGACTTGATCGTGGTGATTCAGAACGGCAAAGTCCAGGAGTATGGCACACACCAGCA GCTACTGGCACAGAAAGGCATCTATTTCTCCATGGTCAGCGTCCAGGCTGGAGCAAAGCG CTCATCAACTGTGACCATGTGAATTGTTATATGTTGTCTAATATTTGTGTTAAAATCTGG GCATTTAATCAAAATTTTAAAAGTGAACACTTACTGGAAAAACTTTCTAGAGTTACTTGT TTAACATTTCCTGCTACCATTGAAGATCATTCCACCAAGTTCAGATTCTTCAGAGACTTT ATAATTGAAGGAAAAGAAATAAATATCATCAAGTGGAGTAACATAATGGCTTTAATTGCA TTATAAAATTAATAGAATAATTCAAAGTAGATTTGTTAATAAAGTTTATAATTTTTATTT ATATTTTCTTATTCACACTGTAACTGACTACTTGCTAAAAGATTAAAAGTAGCAAAAAGT ACTGAATGTTTGCATAAAGTACCCATAATAAAACTAAACTTTTATATGAAAAAAAAAAAA |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 456-670, gnl|bosTau2|chr4 (13141907-13141693) | |
| 456-670, gnl|canFam2|chr4 (87785412-87785587) | |
| 456-670, gnl|danRer3|chrUn (59096336-59096599) | |
| 456-670, gnl|dasNov1|scaffold_61207 (6775-6949) | |
| 456-670, gnl|echTel1|scaffold_286413 (47065-47241) | |
| 456-670, gnl|fr1|chrUn (62352414-62352166) | |
| 456-670, gnl|galGal2|chr2 (20017355-20017179) | |
| 456-670, gnl|hg17|chr4 (159094025-159094209) | |
| 456-670, gnl|Hg17|chr7 (86676274-86676060) | |
| 456-670, gnl|loxAfr1|scaffold_68416 (2074-2250) | |
| 456-670, gnl|mm7|chr5 (8996617-8996791) | |
| 456-670, gnl|Mm7|chr5 (8996608-8996822) | |
| 456-670, gnl|monDom2|scaffold_7 (55306703-55306527) | |
| 456-670, gnl|oryCun1|scaffold_173139 (39446-39620) | |
| 456-670, gnl|panTro1|chr3 (176536693-176536877) | |
| 456-670, gnl|rheMac2|chr5 (150023775-150023929) | |
| 456-670, gnl|rn3|chr4 (22004083-22004257) | |
| 456-670, gnl|tetNig1|chr8 (7529328-7529077) | |
| 456-670, gnl|xenTro1|scaffold_2237 (10731-10573) | |
| 905-1069, gnl|bosTau2|chr4 (12461952-12461784) | |
| 905-1069, gnl|Hg17|chr7 (86777970-86777830) | |
| 905-1069, gnl|Mm7|chr5 (8903816-8903954) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 456-670, gnl|bosTau2|chr4 (13141907-13141693) | |
| 456-670, gnl|canFam2|chr4 (87785412-87785587) | |
| 456-670, gnl|danRer3|chrUn (59096336-59096599) | |
| 456-670, gnl|dasNov1|scaffold_61207 (6775-6949) | |
| 456-670, gnl|echTel1|scaffold_286413 (47065-47241) | |
| 456-670, gnl|fr1|chrUn (62352414-62352166) | |
| 456-670, gnl|galGal2|chr2 (20017355-20017179) | |
| 456-670, gnl|hg17|chr4 (159094025-159094209) | |
| 456-670, gnl|Hg17|chr7 (86676274-86676060) | |
| 456-670, gnl|loxAfr1|scaffold_68416 (2074-2250) | |
| 456-670, gnl|mm7|chr5 (8996617-8996791) | |
| 456-670, gnl|Mm7|chr5 (8996608-8996822) | |
| 456-670, gnl|monDom2|scaffold_7 (55306703-55306527) | |
| 456-670, gnl|oryCun1|scaffold_173139 (39446-39620) | |
| 456-670, gnl|panTro1|chr3 (176536693-176536877) | |
| 456-670, gnl|rheMac2|chr5 (150023775-150023929) | |
| 456-670, gnl|rn3|chr4 (22004083-22004257) | |
| 456-670, gnl|tetNig1|chr8 (7529328-7529077) | |
| 456-670, gnl|xenTro1|scaffold_2237 (10731-10573) | |
| 905-1069, gnl|bosTau2|chr4 (12461952-12461784) | |
| 905-1069, gnl|Hg17|chr7 (86777970-86777830) | |
| 905-1069, gnl|Mm7|chr5 (8903816-8903954) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| sug (3.05499) | |
| cbe (0.717703) | |
| pro (0.512033) | |
| rec (0.346141) | |
| cje (0.330469) | |
| liv (0.146284) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (3.05499) | |
| cbe (0.717703) | |
| pro (0.512033) | |
| rec (0.346141) | |
| cje (0.330469) | |
| liv (0.146284) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jej (0.0989218) |