Non-Coding RNA Search

Ss1.1-rsug12_f12.5

Sequence:


               
               CTTCCGGCTCTAATTTTCGCTGTAAAGCTGGCCAAGTACTACCGTCGAATGGATTCGGAA
GACGTGTATGAGGACGGAAAGGTAGACAAGTAAGATGCTGGGGGATCCTTTTCTCAGTGG
TGCCACCTTCCAGGAGCTTTTGCTAAACAAGGGCTCTGATGAGGGTAAACTGGACTGTTT
TTTAAGGCGGCAGGATGTTTTCTTTGAAATGTTTTCCTTCCTGGGATGTTTTCTTTGTAC
CGATGTTCATAGGCTTATTTGAATTCTTCTTCCACTTGTTTCACCGTCTCAGCTTCCTTA
ACCAGCCTTCTTATTTCTTGTTTGCAGTTCCTCTGTCTCGGGGACTTGGCACTTGACTTT
ATTAACTCTATTTACTCGTTTTCATTCTGACTCTATGGCCCACCCTTCACTCTGTCTCGT
GAACTTGTGTTCAGAATGTGTTCATTTTCGCCTCCTTCTCAATACTCGTGTCTCCTGAAT
TGGCTCTGTCAGCATCTGTATTAGAGTAAAAATATGGAGGTTGCAGCTATTGAGGTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGGCTCTAATTTTCGCTGTAAAGCTGGCCAAGTACTACCGTCGAATGGATTCGGAA
GACGTGTATGAGGACGGAAAGGTAGACAAGTAAGATGCTGGGGGATCCTTTTCTCAGTGG
TGCCACCTTCCAGGAGCTTTTGCTAAACAAGGGCTCTGATGAGGGTAAACTGGACTGTTT
TTTAAGGCGGCAGGATGTTTTCTTTGAAATGTTTTCCTTCCTGGGATGTTTTCTTTGTAC
CGATGTTCATAGGCTTATTTGAATTCTTCTTCCACTTGTTTCACCGTCTCAGCTTCCTTA
ACCAGCCTTCTTATTTCTTGTTTGCAGTTCCTCTGTCTCGGGGACTTGGCACTTGACTTT
ATTAACTCTATTTACTCGTTTTCATTCTGACTCTATGGCCCACCCTTCACTCTGTCTCGT
GAACTTGTGTTCAGAATGTGTTCATTTTCGCCTCCTTCTCAATACTCGTGTCTCCTGAAT
TGGCTCTGTCAGCATCTGTATTAGAGTAAAAATATGGAGGTTGCAGCTATTGAGGTGTAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr29 (7597535-7597035)
               

               
               1-516, gnl|Hg17|chr4 (15658387-15657869)
               

               
               1-516, gnl|Mm7|chr5 (43322424-43321937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr29 (7597535-7597035)
               

               
               1-516, gnl|Hg17|chr4 (15658387-15657869)
               

               
               1-516, gnl|Mm7|chr5 (43322424-43321937)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               tra (0.123092)

	1-516, gnl\|bosTau2\|chr29 (7597535-7597035)
	1-516, gnl\|Hg17\|chr4 (15658387-15657869)
	1-516, gnl\|Mm7\|chr5 (43322424-43321937)