Non-Coding RNA Search

Ss1.1-rsug12_h7.5

Sequence:


               
               ATTTTATTCCCTTCCGTAAAACTTATTAATTTTATTTTGTGATAAGACTCATACTATATT
TACCGTTCTTATTTCTTCTCCTTCAACTACAGAAAGTAACAGCAACTGAGCCCAAAGGGC
TTCTCTGAATTTTGGATATGTTTGAAATGTTTTATATTTTTCACAGCCTACAGTCAGAAT
GATAAACAAAGATGTCCCAACGATAACTAAAAAAAGTATTTAGGGATTCTTCAATTTGTT
TTGTACTGAATACTATTTTGAAACATAAGTTAACGCCATTAGCTGTTTTTTTTGAAAGGG
TGGCGGGAGGGAAAAAGAGATAAACGTATTAATACTAAAAATAAATATGGCAAATTGATG
TAAAAAATTTCCCCTACTATTCTAAGAGCTGTTGATATCCCAAGCAATTGCTGTATCTCC
AGCTACAAAGTGCAAAAGAAAGAATGCCTTGATCCAGTATTATTTTCCTTTCTTTAAGTT
TTGGTTATGTTGACGATTTACCCCTTTTATTTTCCTCATGTAGGTAAATGTGTAGCATTC
TACAAGGCATGCTGGGTAAAATGTACTATGCAAATGTGTTCAGTGCTGCATGTTATGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATTCCCTTCCGTAAAACTTATTAATTTTATTTTGTGATAAGACTCATACTATATT
TACCGTTCTTATTTCTTCTCCTTCAACTACAGAAAGTAACAGCAACTGAGCCCAAAGGGC
TTCTCTGAATTTTGGATATGTTTGAAATGTTTTATATTTTTCACAGCCTACAGTCAGAAT
GATAAACAAAGATGTCCCAACGATAACTAAAAAAAGTATTTAGGGATTCTTCAATTTGTT
TTGTACTGAATACTATTTTGAAACATAAGTTAACGCCATTAGCTGTTTTTTTTGAAAGGG
TGGCGGGAGGGAAAAAGAGATAAACGTATTAATACTAAAAATAAATATGGCAAATTGATG
TAAAAAATTTCCCCTACTATTCTAAGAGCTGTTGATATCCCAAGCAATTGCTGTATCTCC
AGCTACAAAGTGCAAAAGAAAGAATGCCTTGATCCAGTATTATTTTCCTTTCTTTAAGTT
TTGGTTATGTTGACGATTTACCCCTTTTATTTTCCTCATGTAGGTAAATGTGTAGCATTC
TACAAGGCATGCTGGGTAAAATGTACTATGCAAATGTGTTCAGTGCTGCATGTTATGTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               345-437, - strand, RNAz p=0.603979
               

               
               439-551, + strand, RNAz p=0.769927

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-437, - strand, RNAz p=0.603979
               

               
               439-551, + strand, RNAz p=0.769927

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-437, gnl|bosTau2|chr2 (29491630-29492056)
               

               
               3-437, gnl|canFam2|chr19 (56014906-56015462)
               

               
               3-437, gnl|dasNov1|scaffold_6676 (91077-91598)
               

               
               3-437, gnl|echTel1|scaffold_320856 (17283-16762)
               

               
               3-437, gnl|hg17|chr2 (152515085-152515607)
               

               
               3-437, gnl|Hg17|chr2 (152515601-152515153)
               

               
               3-437, gnl|loxAfr1|scaffold_1142 (61280-61784)
               

               
               3-437, gnl|mm7|chr2 (52435930-52436423)
               

               
               3-437, gnl|Mm7|chr2 (52436418-52435987)
               

               
               3-437, gnl|monDom2|scaffold_2 (42892065-42892597)
               

               
               3-437, gnl|oryCun1|scaffold_214893 (174709-174201)
               

               
               3-437, gnl|panTro1|chr13 (41574400-41574922)
               

               
               3-437, gnl|rheMac2|chr12 (15502974-15503493)
               

               
               3-437, gnl|rn3|chr3 (33826782-33827272)
               

               
               3-437, gnl|xenTro1|scaffold_524 (88190-88682)
               


               
               439-600, gnl|bosTau2|chr2 (29492080-29492243)
               

               
               439-600, gnl|Hg17|chr2 (152515151-152514986)
               

               
               439-600, gnl|Mm7|chr2 (52435986-52435839)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-437, gnl|bosTau2|chr2 (29491630-29492056)
               

               
               3-437, gnl|canFam2|chr19 (56014906-56015462)
               

               
               3-437, gnl|dasNov1|scaffold_6676 (91077-91598)
               

               
               3-437, gnl|echTel1|scaffold_320856 (17283-16762)
               

               
               3-437, gnl|hg17|chr2 (152515085-152515607)
               

               
               3-437, gnl|Hg17|chr2 (152515601-152515153)
               

               
               3-437, gnl|loxAfr1|scaffold_1142 (61280-61784)
               

               
               3-437, gnl|mm7|chr2 (52435930-52436423)
               

               
               3-437, gnl|Mm7|chr2 (52436418-52435987)
               

               
               3-437, gnl|monDom2|scaffold_2 (42892065-42892597)
               

               
               3-437, gnl|oryCun1|scaffold_214893 (174709-174201)
               

               
               3-437, gnl|panTro1|chr13 (41574400-41574922)
               

               
               3-437, gnl|rheMac2|chr12 (15502974-15503493)
               

               
               3-437, gnl|rn3|chr3 (33826782-33827272)
               

               
               3-437, gnl|xenTro1|scaffold_524 (88190-88682)
               


               
               439-600, gnl|bosTau2|chr2 (29492080-29492243)
               

               
               439-600, gnl|Hg17|chr2 (152515151-152514986)
               

               
               439-600, gnl|Mm7|chr2 (52435986-52435839)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               sug (0.127291)

	345-437, - strand, RNAz p=0.603979
	439-551, + strand, RNAz p=0.769927

	3-437, gnl\|bosTau2\|chr2 (29491630-29492056)
	3-437, gnl\|canFam2\|chr19 (56014906-56015462)
	3-437, gnl\|dasNov1\|scaffold_6676 (91077-91598)
	3-437, gnl\|echTel1\|scaffold_320856 (17283-16762)
	3-437, gnl\|hg17\|chr2 (152515085-152515607)
	3-437, gnl\|Hg17\|chr2 (152515601-152515153)
	3-437, gnl\|loxAfr1\|scaffold_1142 (61280-61784)
	3-437, gnl\|mm7\|chr2 (52435930-52436423)
	3-437, gnl\|Mm7\|chr2 (52436418-52435987)
	3-437, gnl\|monDom2\|scaffold_2 (42892065-42892597)
	3-437, gnl\|oryCun1\|scaffold_214893 (174709-174201)
	3-437, gnl\|panTro1\|chr13 (41574400-41574922)
	3-437, gnl\|rheMac2\|chr12 (15502974-15503493)
	3-437, gnl\|rn3\|chr3 (33826782-33827272)
	3-437, gnl\|xenTro1\|scaffold_524 (88190-88682)

	439-600, gnl\|bosTau2\|chr2 (29492080-29492243)
	439-600, gnl\|Hg17\|chr2 (152515151-152514986)
	439-600, gnl\|Mm7\|chr2 (52435986-52435839)