Non-Coding RNA Search

Ss1.1-rsug12_i12.5

Sequence:


               
               GCGCGGGAACAAGGCGCATCATGCTCGCCGCGGTCGGGAGCCTCCTGCGCCTCCGCTCGG
GGTGCATCCCCCGCTGCGCCCCGGGAGCACCGCCAGAAACCTCGAGGCGGCCGGTAGCAT
CTCTCCGGCCCCGGGGTCTTCCTCAGTACTCCAGTGGCGGGGCCCCGGGCGGCTCGGAGC
CTCAGGGTTCCGCAGGGAGGGTCCACAGGGTCCCCGCCGAGCATAAGCCGTCGCAATTCG
ACAAGAAGATCTTGCTGTGGACCGGACGTTTCAAAGCGATGGAAGAGATCCCCCCTAGGA
TCCCGCCAGAAATGATAGATGCTGCAAGAAACAAAGCACGAGTGAAAGCCTGTTACATAA
TGATTGGACTGACAATTATCGCCTGTTTTGCAGTGATAGCATCAGCCAAAAGGGCTGCAG
AACGACATGAATCCTTAACGAGTTGGAACCTGGCAAAGAAGGCTAAGTGGCGTGAAGAAG
CTGCATTGGCTGCACAGGCCAAGGCTAAATGATACTCTGACAAAGTGGTAATGGGAATAT
CATCATTGTTATCAGCAAAAATAAAAGATTGGTAAGAGAATATTCAACAACTTTTTGCCA
AGGTTTTATTTGGTGACAAGATCCACAGCCTTTTTTTACTTTTTAGTAAACTTTTATTGA
AGTAGAACATACATTCAGAAGGCACACAAAAGTGTATACAGCTTGATAGATTTTTATCTA
GTGAACACACCTGCGTAACCACCGCCCAGGTGGAAATGTAGGACATCAGTAGCACCTCAA
AAGCCTCCTTTCTGCCCTCTGTCAGTCACTACCCTCTGCAGATAACCATTGATTAGTTTT
GCCTGTTCTGAACTTTATATAAATGGAGTTCCACAACAAGCATTTGTGATAGGTATAAAC
TGAATCACTTCGTTGTACAGCAGAAATTATCACATTGTAAATCAACTATACTTTAATAAA
ATTTTAAAACAATGAACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGGGAACAAGGCGCATCATGCTCGCCGCGGTCGGGAGCCTCCTGCGCCTCCGCTCGG
GGTGCATCCCCCGCTGCGCCCCGGGAGCACCGCCAGAAACCTCGAGGCGGCCGGTAGCAT
CTCTCCGGCCCCGGGGTCTTCCTCAGTACTCCAGTGGCGGGGCCCCGGGCGGCTCGGAGC
CTCAGGGTTCCGCAGGGAGGGTCCACAGGGTCCCCGCCGAGCATAAGCCGTCGCAATTCG
ACAAGAAGATCTTGCTGTGGACCGGACGTTTCAAAGCGATGGAAGAGATCCCCCCTAGGA
TCCCGCCAGAAATGATAGATGCTGCAAGAAACAAAGCACGAGTGAAAGCCTGTTACATAA
TGATTGGACTGACAATTATCGCCTGTTTTGCAGTGATAGCATCAGCCAAAAGGGCTGCAG
AACGACATGAATCCTTAACGAGTTGGAACCTGGCAAAGAAGGCTAAGTGGCGTGAAGAAG
CTGCATTGGCTGCACAGGCCAAGGCTAAATGATACTCTGACAAAGTGGTAATGGGAATAT
CATCATTGTTATCAGCAAAAATAAAAGATTGGTAAGAGAATATTCAACAACTTTTTGCCA
AGGTTTTATTTGGTGACAAGATCCACAGCCTTTTTTTACTTTTTAGTAAACTTTTATTGA
AGTAGAACATACATTCAGAAGGCACACAAAAGTGTATACAGCTTGATAGATTTTTATCTA
GTGAACACACCTGCGTAACCACCGCCCAGGTGGAAATGTAGGACATCAGTAGCACCTCAA
AAGCCTCCTTTCTGCCCTCTGTCAGTCACTACCCTCTGCAGATAACCATTGATTAGTTTT
GCCTGTTCTGAACTTTATATAAATGGAGTTCCACAACAAGCATTTGTGATAGGTATAAAC
TGAATCACTTCGTTGTACAGCAGAAATTATCACATTGTAAATCAACTATACTTTAATAAA
ATTTTAAAACAATGAACAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958368|emb|CAI16921.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958368|emb|CAI16921.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               518-664, - strand, RNAz p=0.998758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-664, - strand, RNAz p=0.998758

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               190-460, gnl|bosTau2|chr14 (11465272-11465522)
               

               
               190-460, gnl|Mm7|chr3 (114319248-114318980)
               


               
               518-772, gnl|bosTau2|chr14 (11465759-11466006)
               

               
               518-772, gnl|Hg17|chr6 (117180443-117180184)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-460, gnl|bosTau2|chr14 (11465272-11465522)
               

               
               190-460, gnl|Mm7|chr3 (114319248-114318980)
               


               
               518-772, gnl|bosTau2|chr14 (11465759-11466006)
               

               
               518-772, gnl|Hg17|chr6 (117180443-117180184)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sag (0.913576)
               

               
               liv (0.585137)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.913576)
               

               
               liv (0.585137)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

	190-460, gnl\|bosTau2\|chr14 (11465272-11465522)
	190-460, gnl\|Mm7\|chr3 (114319248-114318980)

	518-772, gnl\|bosTau2\|chr14 (11465759-11466006)
	518-772, gnl\|Hg17\|chr6 (117180443-117180184)

	sag (0.913576)
	liv (0.585137)
	che (0.272628)
	pla (0.267344)
	lyg (0.266205)
	sug (0.254582)
	nlu (0.191681)
	sto (0.179824)
	bfe (0.149858)
	fat (0.147427)
	ova (0.129132)
	pgl (0.118483)