Non-Coding RNA Search

Ss1.1-rsug12_i20.5

Sequence:


               
               TACATTTGGGACATGAGCCAGAGTTTACAAGGGAACCAACAAAACTCTCTATAACATAAA
GGATGGGGTTTTGGATTTTGTACAATAATAAAACTACAATGCAGCCTATGGCTAGGGAAG
GACATGATGTATATAATTGTAAAATACTGTTCTAAATTATTCAGGCCTATAGTTTCCATT
ACTGGAGTCCTCCATTGTGTGGCTGAGTATTTGACATGCACACAGTGTGGTTTATTTTAA
GGAGCCAGTGCGCCCCCCTCTCCCCAGGTAGTTGGTTGGCTGTGGACTCTGTGACTTTCG
TCTCAACCTGTGTTGTAAGATCTCGGGGCTCTCGTGCTTTCTCTTTCTGTGTCTCTTTCT
TCCCCAATCTCTTCCTTCTTTTCTTAGTCTCTCTTTTTTTTTTCAATCTCTTTGACTCTT
TCAGTCTCTCTCTGAGTCTCATTTTTAAAACTGCTCTTTTAGAATGGGAAAAGGCTCAGA
TCCTGCTGTGGCATGGGGCCTATGTGTCTCAGTCGCGTCTGCTGTGAAGCACACGATGCT
CTATTTATTGTAGAAAGTGACTTTATTTGCTTTCTAGAATTGTTTATAACAGATGGTATA
AGAGAGGTAATAAACAGAGAAGAATCTATGCTTGTAAAGAATACAAAAGTTAATTTTACC
TACTATAATATGACTGTCTGAAACTTATTTTCTCTCTGAGAAATAAATGTTCTAATGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATTTGGGACATGAGCCAGAGTTTACAAGGGAACCAACAAAACTCTCTATAACATAAA
GGATGGGGTTTTGGATTTTGTACAATAATAAAACTACAATGCAGCCTATGGCTAGGGAAG
GACATGATGTATATAATTGTAAAATACTGTTCTAAATTATTCAGGCCTATAGTTTCCATT
ACTGGAGTCCTCCATTGTGTGGCTGAGTATTTGACATGCACACAGTGTGGTTTATTTTAA
GGAGCCAGTGCGCCCCCCTCTCCCCAGGTAGTTGGTTGGCTGTGGACTCTGTGACTTTCG
TCTCAACCTGTGTTGTAAGATCTCGGGGCTCTCGTGCTTTCTCTTTCTGTGTCTCTTTCT
TCCCCAATCTCTTCCTTCTTTTCTTAGTCTCTCTTTTTTTTTTCAATCTCTTTGACTCTT
TCAGTCTCTCTCTGAGTCTCATTTTTAAAACTGCTCTTTTAGAATGGGAAAAGGCTCAGA
TCCTGCTGTGGCATGGGGCCTATGTGTCTCAGTCGCGTCTGCTGTGAAGCACACGATGCT
CTATTTATTGTAGAAAGTGACTTTATTTGCTTTCTAGAATTGTTTATAACAGATGGTATA
AGAGAGGTAATAAACAGAGAAGAATCTATGCTTGTAAAGAATACAAAAGTTAATTTTACC
TACTATAATATGACTGTCTGAAACTTATTTTCTCTCTGAGAAATAAATGTTCTAATGGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-236, - strand, RNAz p=0.74258
               

               
               497-693, - strand, RNAz p=0.987067

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, - strand, RNAz p=0.74258
               

               
               497-693, - strand, RNAz p=0.987067

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-720, gnl|bosTau2|chr23 (8566058-8566770)
               

               
               1-720, gnl|canFam2|chr12 (8345985-8346663)
               

               
               1-720, gnl|dasNov1|scaffold_126894 (4-633)
               

               
               1-720, gnl|echTel1|scaffold_304785 (49026-48375)
               

               
               1-720, gnl|galGal2|chr32 (845300-844762)
               

               
               1-720, gnl|hg17|chr6 (36307743-36308364)
               

               
               1-720, gnl|Hg17|chr6 (36307850-36308541)
               

               
               1-720, gnl|loxAfr1|scaffold_25597 (23827-24472)
               

               
               1-720, gnl|mm7|chr17 (27023999-27024569)
               

               
               1-720, gnl|Mm7|chr17 (27024112-27024737)
               

               
               1-720, gnl|monDom2|scaffold_42 (10506815-10506200)
               

               
               1-720, gnl|oryCun1|scaffold_187478 (92382-91755)
               

               
               1-720, gnl|panTro1|chr5 (36772406-36773023)
               

               
               1-720, gnl|rheMac2|chr4 (35985921-35986548)
               

               
               1-720, gnl|rn3|chr20 (7122973-7123564)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr23 (8566058-8566770)
               

               
               1-720, gnl|canFam2|chr12 (8345985-8346663)
               

               
               1-720, gnl|dasNov1|scaffold_126894 (4-633)
               

               
               1-720, gnl|echTel1|scaffold_304785 (49026-48375)
               

               
               1-720, gnl|galGal2|chr32 (845300-844762)
               

               
               1-720, gnl|hg17|chr6 (36307743-36308364)
               

               
               1-720, gnl|Hg17|chr6 (36307850-36308541)
               

               
               1-720, gnl|loxAfr1|scaffold_25597 (23827-24472)
               

               
               1-720, gnl|mm7|chr17 (27023999-27024569)
               

               
               1-720, gnl|Mm7|chr17 (27024112-27024737)
               

               
               1-720, gnl|monDom2|scaffold_42 (10506815-10506200)
               

               
               1-720, gnl|oryCun1|scaffold_187478 (92382-91755)
               

               
               1-720, gnl|panTro1|chr5 (36772406-36773023)
               

               
               1-720, gnl|rheMac2|chr4 (35985921-35986548)
               

               
               1-720, gnl|rn3|chr20 (7122973-7123564)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               rec (0.17307)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	117-236, - strand, RNAz p=0.74258
	497-693, - strand, RNAz p=0.987067

	1-720, gnl\|bosTau2\|chr23 (8566058-8566770)
	1-720, gnl\|canFam2\|chr12 (8345985-8346663)
	1-720, gnl\|dasNov1\|scaffold_126894 (4-633)
	1-720, gnl\|echTel1\|scaffold_304785 (49026-48375)
	1-720, gnl\|galGal2\|chr32 (845300-844762)
	1-720, gnl\|hg17\|chr6 (36307743-36308364)
	1-720, gnl\|Hg17\|chr6 (36307850-36308541)
	1-720, gnl\|loxAfr1\|scaffold_25597 (23827-24472)
	1-720, gnl\|mm7\|chr17 (27023999-27024569)
	1-720, gnl\|Mm7\|chr17 (27024112-27024737)
	1-720, gnl\|monDom2\|scaffold_42 (10506815-10506200)
	1-720, gnl\|oryCun1\|scaffold_187478 (92382-91755)
	1-720, gnl\|panTro1\|chr5 (36772406-36773023)
	1-720, gnl\|rheMac2\|chr4 (35985921-35986548)
	1-720, gnl\|rn3\|chr20 (7122973-7123564)

	rec (0.17307)
	cje (0.165235)
	lun (0.150489)
	csk (0.140746)
	cst (0.140036)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)