Non-Coding RNA Search

Ss1.1-rsug12_i5.5

Sequence:


               
               CTGGAAGACCATTTTTTAGTAAATATTTTCCTCAGATTCAAAGAAGAGACCATTCCAAGT
AGCACTGCCTCCAAAACTGAGACCAAGCAGAGTGTCAACTCTTTTACCTTCAAAGATGAT
CCTCATCCCAAATGCACGTTGGGCCCCAAAGGCCACATTCATGAGAGACGATGAGTAAAG
GTTACAGCTCCTCTAATAAAATAGGACGTTTCAATTATCTGTAAGGATTTTAGTTCCCTT
GACACCACTTGTAAAATAGCACAAAATGCACTTCAGGAATTTTGATGGTGACTGTGTAGA
ATTACGGTTTTAACGGCATTTAAGATGCCAGGACGAACTCGAGCCATGGGCGTTGAGACC
TTGTAGCTCTTAATCATCTTAATTTATTAGCTATAGCATTCTCTGTCTCACCTCTCCCCT
TTGACCTTCTCTGCCACCAGCCACCACGACATTTACCATGAATTTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAAGACCATTTTTTAGTAAATATTTTCCTCAGATTCAAAGAAGAGACCATTCCAAGT
AGCACTGCCTCCAAAACTGAGACCAAGCAGAGTGTCAACTCTTTTACCTTCAAAGATGAT
CCTCATCCCAAATGCACGTTGGGCCCCAAAGGCCACATTCATGAGAGACGATGAGTAAAG
GTTACAGCTCCTCTAATAAAATAGGACGTTTCAATTATCTGTAAGGATTTTAGTTCCCTT
GACACCACTTGTAAAATAGCACAAAATGCACTTCAGGAATTTTGATGGTGACTGTGTAGA
ATTACGGTTTTAACGGCATTTAAGATGCCAGGACGAACTCGAGCCATGGGCGTTGAGACC
TTGTAGCTCTTAATCATCTTAATTTATTAGCTATAGCATTCTCTGTCTCACCTCTCCCCT
TTGACCTTCTCTGCCACCAGCCACCACGACATTTACCATGAATTTACT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-361, gnl|bosTau2|chr21 (12500351-12500001)
               

               
               2-361, gnl|Hg17|chr15 (88845937-88846278)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-361, gnl|bosTau2|chr21 (12500351-12500001)
               

               
               2-361, gnl|Hg17|chr15 (88845937-88846278)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               gul (0.355177)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	2-361, gnl\|bosTau2\|chr21 (12500351-12500001)
	2-361, gnl\|Hg17\|chr15 (88845937-88846278)

	gul (0.355177)
	hea (0.204499)
	sag (0.182715)
	rec (0.17307)
	mcp (0.170648)
	tbr (0.154178)
	lin (0.145603)
	sug (0.127291)
	eru (0.120048)