Non-Coding RNA Search

Ss1.1-rsug12_m16.5.5

Sequence:


               
               TACCGAAAGATCATTATTCGTCCTCAGAATGTTAGCTGGGAAGTCGTTGCATATGATGAT
CCTAAAATTCCACTCTTCAACACAGATGTGGACAACCTAGAAGGGAAACCACCACCAGTG
TTTGCTTCTGAAGGCAAATACAGAGCTCTGAAGATGGATTTTTCCCTTCCTCCTTCTACC
TATGCGACCATGGCCATTCGTGAAGTGCTAAAAATGGATACCAGCATCAAGAAGCAGACC
CAGCTGAACACCACCTGGCTCCGCTGAGACCTTTGTCCCCAGATTAGAAAATGCAGACAA
CTGGCTTCCTGTTCGTTTTCGTCTTAGTACAGACCGCTATATGGATTTTGGATCTTTGTA
GTAAAAAACTATTTGTATTTTTTCAACTTTTTATTAGCTTACTTTGCAATATTTGTACAT
ATATCCAAATCTTGGGGATCCTAATTCTAGCTCAGAGAATATAAATTAGTTAGACTATAT
TTCAGGTGCTTAAATCATAGTAAAATGTCTGCTTTACTGGCTTTTAATCATTTTAAAGAA
ATTTGATTCAAAGTAGCAGTTTTAGGTTTCACTACATTCTAAAAGAACAACAGGAGGGAG
TTCCCATTGTGGCTCAGTGGGTTACACATCCAGCTAGTATCCGTGAGGATGTGGGTGTGA
TCCCTGGCCCCTCTTAATGGGTTAGGGATCCAGTGTTGCCGTGAGCTGTGGTATAGATTG
CAGACACGGCTAAGATCTGGCATTGCTGTGGCTGTGGCTATGGCCACCAGCTGCAGCTTC
AGTTAAACTCGCACCCTTAGAATTTCAGTATGCTGCAAATTCGACTTTAACAACAACAGC
AAAAAAGAGCAACAGGAACTTTTAACACTTGCATGGATGGAGGACACAACAATGCATTTT
AAGAGAAAACAAATTTTGATAATGGATAAATAATTAGGGTGACCACCTCCGTGAATGATT
ATAAGTATCTATGAATATAAATACAGTACTCATGCTTATTTACTTAAATGATGATAAAAC
ATCCACAGGTTTATAAACACAAAAGTGAGTATCATTGTCCAGCTCATGTACCAGGTTCAG
GTAAGTGTTTATAGACTTCCAGTTGTTATAGCTTTTGTTTGCATTTGTTGTTATGGCCTT
CCAGGAATATTGTATCCTTAAGGCTTTTTTTCCCTTAATCTCAATATGTGCAGCTGTTTT
TATTAGTTAAGGTCTAATTTTTACTCTAGGTGCCTTTTATGTTCAGAGTTCTTTCCACTG
GACTGGTATTTGCCCAACAATAAAAAAGAGCAAAGAAGAAAACTTGAAAACTTACAAGGG
CTTCTCCTGTCAGCAGCTACCCTTTGTTACCCACAGCTTAGGTATTTCCAGTTCTGGCCA
TGCATAAAACTTTTCTCTGGTTTGAGAGCATAATCATGCCTTTCCAAGGGTGTGCAACGT
AATTGTACCAATTTTATTTTCTATCATTTCTAGAACCAAATATAATAAATATTTTTAAAA
ACTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCGAAAGATCATTATTCGTCCTCAGAATGTTAGCTGGGAAGTCGTTGCATATGATGAT
CCTAAAATTCCACTCTTCAACACAGATGTGGACAACCTAGAAGGGAAACCACCACCAGTG
TTTGCTTCTGAAGGCAAATACAGAGCTCTGAAGATGGATTTTTCCCTTCCTCCTTCTACC
TATGCGACCATGGCCATTCGTGAAGTGCTAAAAATGGATACCAGCATCAAGAAGCAGACC
CAGCTGAACACCACCTGGCTCCGCTGAGACCTTTGTCCCCAGATTAGAAAATGCAGACAA
CTGGCTTCCTGTTCGTTTTCGTCTTAGTACAGACCGCTATATGGATTTTGGATCTTTGTA
GTAAAAAACTATTTGTATTTTTTCAACTTTTTATTAGCTTACTTTGCAATATTTGTACAT
ATATCCAAATCTTGGGGATCCTAATTCTAGCTCAGAGAATATAAATTAGTTAGACTATAT
TTCAGGTGCTTAAATCATAGTAAAATGTCTGCTTTACTGGCTTTTAATCATTTTAAAGAA
ATTTGATTCAAAGTAGCAGTTTTAGGTTTCACTACATTCTAAAAGAACAACAGGAGGGAG
TTCCCATTGTGGCTCAGTGGGTTACACATCCAGCTAGTATCCGTGAGGATGTGGGTGTGA
TCCCTGGCCCCTCTTAATGGGTTAGGGATCCAGTGTTGCCGTGAGCTGTGGTATAGATTG
CAGACACGGCTAAGATCTGGCATTGCTGTGGCTGTGGCTATGGCCACCAGCTGCAGCTTC
AGTTAAACTCGCACCCTTAGAATTTCAGTATGCTGCAAATTCGACTTTAACAACAACAGC
AAAAAAGAGCAACAGGAACTTTTAACACTTGCATGGATGGAGGACACAACAATGCATTTT
AAGAGAAAACAAATTTTGATAATGGATAAATAATTAGGGTGACCACCTCCGTGAATGATT
ATAAGTATCTATGAATATAAATACAGTACTCATGCTTATTTACTTAAATGATGATAAAAC
ATCCACAGGTTTATAAACACAAAAGTGAGTATCATTGTCCAGCTCATGTACCAGGTTCAG
GTAAGTGTTTATAGACTTCCAGTTGTTATAGCTTTTGTTTGCATTTGTTGTTATGGCCTT
CCAGGAATATTGTATCCTTAAGGCTTTTTTTCCCTTAATCTCAATATGTGCAGCTGTTTT
TATTAGTTAAGGTCTAATTTTTACTCTAGGTGCCTTTTATGTTCAGAGTTCTTTCCACTG
GACTGGTATTTGCCCAACAATAAAAAAGAGCAAAGAAGAAAACTTGAAAACTTACAAGGG
CTTCTCCTGTCAGCAGCTACCCTTTGTTACCCACAGCTTAGGTATTTCCAGTTCTGGCCA
TGCATAAAACTTTTCTCTGGTTTGAGAGCATAATCATGCCTTTCCAAGGGTGTGCAACGT
AATTGTACCAATTTTATTTTCTATCATTTCTAGAACCAAATATAATAAATATTTTTAAAA
ACTCAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               130-595, gnl|bosTau2|chr4 (22828087-22828561)
               

               
               130-595, gnl|Hg17|chr7 (104692325-104691850)
               

               
               130-595, gnl|Mm7|chr5 (22782470-22781994)
               


               
               845-1504, gnl|bosTau2|chr4 (22828549-22829192)
               

               
               845-1504, gnl|Hg17|chr7 (104691862-104690952)
               

               
               845-1504, gnl|Mm7|chr5 (22782007-22781189)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-595, gnl|bosTau2|chr4 (22828087-22828561)
               

               
               130-595, gnl|Hg17|chr7 (104692325-104691850)
               

               
               130-595, gnl|Mm7|chr5 (22782470-22781994)
               


               
               845-1504, gnl|bosTau2|chr4 (22828549-22829192)
               

               
               845-1504, gnl|Hg17|chr7 (104691862-104690952)
               

               
               845-1504, gnl|Mm7|chr5 (22782007-22781189)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	130-595, gnl\|bosTau2\|chr4 (22828087-22828561)
	130-595, gnl\|Hg17\|chr7 (104692325-104691850)
	130-595, gnl\|Mm7\|chr5 (22782470-22781994)

	845-1504, gnl\|bosTau2\|chr4 (22828549-22829192)
	845-1504, gnl\|Hg17\|chr7 (104691862-104690952)
	845-1504, gnl\|Mm7\|chr5 (22782007-22781189)

	tra (0.369276)
	ski (0.29347)
	spl (0.286369)
	sug (0.254582)
	cty (0.20816)
	tes (0.207814)
	fbs (0.175346)
	lin (0.145603)
	ova (0.129132)
	thg (0.126791)
	spc (0.113366)
	eje (0.0988338)