Non-Coding RNA Search

Ss1.1-rsug12_n23.5

Sequence:


               
               CCGGGCCCTCGCTGCTCAGTCCCGCGCTGAGCTCCGGAACCCGCTCCGCTCCTGCAATCC
CCGCAAGGCTACTGCTTCTTCCTCGCACAGACATGGCCTTAAGTGCCGCTGCTGCAGCCG
TGAAGATTGGAATAATTGGTGGCACAGGCCTGGATGATCCAGAAATCTTAGAAGGAAGAA
CTGAAAAATATGTGGATACTCCTTTTGGCAAGCCTTCTGATGCTTTAATTTTGGGAAAGA
TAAAGAATGTTGACTGTGTCCTCCTTGCAAGGCATGGGAGGCAACATACCATTATGCCTT
CAAAAGTCAACTATCAGGCAAACATCTGGGCTCTGAAAGAAGAAGGTTGTACACATATCA
TAGTGACCACAGCTTGTGGTTCCTTGAAGGAAGAGATTCAGCCCGGTGATTTCATCATTA
TCGATCAGTTCATTGACAGGACTACCAAAAGGCCTCAGACCTTCTATGACGGAAACCATT
CCTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCATTCTGCCCTAAAACGAGAG
AGGTCCTCATAGAAACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAAGGGACAATGA
TCACAATTGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCCTCACGTTCCAAACCTGGG
GGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAA
TTTGCTATGCAAGTATCGCCATGGCAACAGATTATGATTGCTGGAAGGAGCATGAGGAAG
TGGTTTCAGTGGATCGGGTTTTAAAGACCCTGAAAGAAAATGCCAATAAAGCCAAAAGTT
TACTTCTTACTACCATACCTCAGATAGGATCCATGGAATGGTCAGAAACCCTCCATAACC
TGAAGAAAATGGCCCAGTTTTCTGTTTTGTTACCAAGACATTAAAAACAAGGAGACTTTC
TAACTCCAGTCATTGGGAAATTCCTGCTTAACTTGTGAGAACATGGAAAAGACATGGAGC
TTTTGTGCTCTTGCCCCCTAAGGAAGAACAAGTGATAAGACAAGACTTTGCTCACATCAG
AGATGCCTTCTAAAAGACCTGGACAGCTTCAAATAATAAAAGGAAAGCAAATGAGCAGTA
AAATGTAGGGAAAAGCTTACACTTTAGAAAAAAGACAAAAAGATCATTTCATCATTTCCC
CATTAAATTTGTAACAATAAAAGAGTAGGCAGTAACATCCAGTTTCTTTGTTGCCAAGGA
ATGTGAAGAAGAAATAGTTCTTGAGCTATTTATTGACATGACTATAAATTGGTAGAATCT
TTTTGGAGGGCAATTTGGTAAAATACATCAAAAGGCTTGAAAATATTTAACATCCTTTGT
GCTGGTTACTCCTAGGAATTTATCTTTAAGAAATATCAGAGATACATACAAATAATTATG
TATAAAGAAGGGTGTATAACATACTATAGTAGCAAATATTCAAAACAATCTGAATATCCA
GCTGGAGGTAAATTATCATTAAGCTCTAATCAGACTGTGAAGCAGCCAACTGAAGATCAT
GTTTTCACATAATATTTAATGGACTAAAGAAATGGTTGATGTATAATATGAAATGAAAAA
GGGATATGTAACCATTTAACAGTACTAATTTGTTTTAAAAATTCTACATAAATATGTACT
AAGACTAGAAAGAAATATATATATATAATCTTTTGTTATTGTATTTGGGGGGATACTAGA
TAATTTTGCATTTTCTTTATATTTTTCCATGTCTTCACATAATTCCCAATGAATATACTC
AAATAATAAAGTTATTTTAAAAATAAAAATGGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCCCTCGCTGCTCAGTCCCGCGCTGAGCTCCGGAACCCGCTCCGCTCCTGCAATCC
CCGCAAGGCTACTGCTTCTTCCTCGCACAGACATGGCCTTAAGTGCCGCTGCTGCAGCCG
TGAAGATTGGAATAATTGGTGGCACAGGCCTGGATGATCCAGAAATCTTAGAAGGAAGAA
CTGAAAAATATGTGGATACTCCTTTTGGCAAGCCTTCTGATGCTTTAATTTTGGGAAAGA
TAAAGAATGTTGACTGTGTCCTCCTTGCAAGGCATGGGAGGCAACATACCATTATGCCTT
CAAAAGTCAACTATCAGGCAAACATCTGGGCTCTGAAAGAAGAAGGTTGTACACATATCA
TAGTGACCACAGCTTGTGGTTCCTTGAAGGAAGAGATTCAGCCCGGTGATTTCATCATTA
TCGATCAGTTCATTGACAGGACTACCAAAAGGCCTCAGACCTTCTATGACGGAAACCATT
CCTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCATTCTGCCCTAAAACGAGAG
AGGTCCTCATAGAAACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAAGGGACAATGA
TCACAATTGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCCTCACGTTCCAAACCTGGG
GGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAA
TTTGCTATGCAAGTATCGCCATGGCAACAGATTATGATTGCTGGAAGGAGCATGAGGAAG
TGGTTTCAGTGGATCGGGTTTTAAAGACCCTGAAAGAAAATGCCAATAAAGCCAAAAGTT
TACTTCTTACTACCATACCTCAGATAGGATCCATGGAATGGTCAGAAACCCTCCATAACC
TGAAGAAAATGGCCCAGTTTTCTGTTTTGTTACCAAGACATTAAAAACAAGGAGACTTTC
TAACTCCAGTCATTGGGAAATTCCTGCTTAACTTGTGAGAACATGGAAAAGACATGGAGC
TTTTGTGCTCTTGCCCCCTAAGGAAGAACAAGTGATAAGACAAGACTTTGCTCACATCAG
AGATGCCTTCTAAAAGACCTGGACAGCTTCAAATAATAAAAGGAAAGCAAATGAGCAGTA
AAATGTAGGGAAAAGCTTACACTTTAGAAAAAAGACAAAAAGATCATTTCATCATTTCCC
CATTAAATTTGTAACAATAAAAGAGTAGGCAGTAACATCCAGTTTCTTTGTTGCCAAGGA
ATGTGAAGAAGAAATAGTTCTTGAGCTATTTATTGACATGACTATAAATTGGTAGAATCT
TTTTGGAGGGCAATTTGGTAAAATACATCAAAAGGCTTGAAAATATTTAACATCCTTTGT
GCTGGTTACTCCTAGGAATTTATCTTTAAGAAATATCAGAGATACATACAAATAATTATG
TATAAAGAAGGGTGTATAACATACTATAGTAGCAAATATTCAAAACAATCTGAATATCCA
GCTGGAGGTAAATTATCATTAAGCTCTAATCAGACTGTGAAGCAGCCAACTGAAGATCAT
GTTTTCACATAATATTTAATGGACTAAAGAAATGGTTGATGTATAATATGAAATGAAAAA
GGGATATGTAACCATTTAACAGTACTAATTTGTTTTAAAAATTCTACATAAATATGTACT
AAGACTAGAAAGAAATATATATATATAATCTTTTGTTATTGTATTTGGGGGGATACTAGA
TAATTTTGCATTTTCTTTATATTTTTCCATGTCTTCACATAATTCCCAATGAATATACTC
AAATAATAAAGTTATTTTAAAAATAAAAATGGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870982|ref|XP_617987.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870982|ref|XP_617987.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               404-643, - strand, RNAz p=0.60137
               

               
               684-923, - strand, RNAz p=0.738669
               

               
               1032-1151, - strand, RNAz p=0.571267
               

               
               1468-1583, - strand, RNAz p=0.774093

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-643, - strand, RNAz p=0.60137
               

               
               684-923, - strand, RNAz p=0.738669
               

               
               1032-1151, - strand, RNAz p=0.571267
               

               
               1468-1583, - strand, RNAz p=0.774093

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               45-1832, gnl|bosTau2|chr24 (31042475-31044213)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1832, gnl|bosTau2|chr24 (31042475-31044213)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cty (0.31224)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	404-643, - strand, RNAz p=0.60137
	684-923, - strand, RNAz p=0.738669
	1032-1151, - strand, RNAz p=0.571267
	1468-1583, - strand, RNAz p=0.774093

	cty (0.31224)
	lin (0.291206)
	ova (0.258264)
	nje (0.16592)
	fco (0.157208)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)