Non-Coding RNA Search

Ss1.1-rsug13_b18.5

Sequence:


               
               GAGGTTCCCGAGGGCCGCTACGATGCCCTCCCCGGAGCGGGTCAGTCAGCTCCTGGACCT
ATGCCTTTGGTGCTTCATGAAGAATATTTCCAGATTTATCACAGACATTAAGCCTTTGCC
ACCCAACATAAAAGATAGACTGATTAAAATAATGAGCGTGCAAGGGCAGATAACAGATTC
AAATATAAGTGAGATTTTACATCCTGAAGTCCAAACTCTAGATCTACGAAGCTGTGATAT
TTCAGATACTGCTCTCCTGCACCTATGTAACTGCAGAAAACTGAAGAAGTTAAATTTAAA
TTCCTCAAAAGAAAACAGAATTTCCATCACTTCAAAAGGAATAAAAGCTGTGGCTTCATC
TTGTTCATATCTGCATGAAGCTTCTTTGAAAAGATGCTGCAATCTCACTGACGAAGGAGT
TCTTGCTCTTGCTCTCAATTGCCGGCTGCTAAAGATCATTGATTTAGGAGGCTGCTTAGG
GATTACTGATGTGTCCTTGCAGGCATTAGGAGAAAACTGCCCACTTTTGCAGTGTGTTGA
TTTTTCAGCCACTCAGGTATCTGACAGCGGCGTGGTTGCACTTGTTAGGGGACCTTGTGC
CAAGAAATTAGAGGAGATTCATATGGGACACTGTGTGAATCTGACCGATGAGGCTGTAGA
AGCTGTCCTTACTTGCTGTCCTCAGATATGTATATTACTCTTCCATGGATGCCCCCTGAT
AACAGATCATTCACGAGTAGTCTTGGAGCAATTAGTTGGACCAAACAAACTAAAGCAAGT
AACATGGACTGTGTATTGAAGCTTATTGAAGCTTATCAGAACTATGATCTTCACACTACT
TTTCCGGGAAACAATGGTCTTAGACATTGGCTTTCCAATAATATGATTTATGCTTCGAAG
TTATGCAAGCTCTTAAACGTGTTAATAGTGCTGTTATTTCTATGTTTGTTGCATCGGCAA
TTGTTCCTGAAGTGGTAATCCTAGCATGCCCTCAGATATATTTGGGGAGGATACTGTGTT
TGTTTGTTAAATAACGAAGTTGTAAATTACTTGTTTTCCCTGGAGATTGCCTTCTCCTAC
CTAGATATCTGAGCTGCTACAAGAGAAATTTACCAGTAGGGTAAACATTAGGAGAAATCG
AAGTAAAGTTATTTCTAAAAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTCCCGAGGGCCGCTACGATGCCCTCCCCGGAGCGGGTCAGTCAGCTCCTGGACCT
ATGCCTTTGGTGCTTCATGAAGAATATTTCCAGATTTATCACAGACATTAAGCCTTTGCC
ACCCAACATAAAAGATAGACTGATTAAAATAATGAGCGTGCAAGGGCAGATAACAGATTC
AAATATAAGTGAGATTTTACATCCTGAAGTCCAAACTCTAGATCTACGAAGCTGTGATAT
TTCAGATACTGCTCTCCTGCACCTATGTAACTGCAGAAAACTGAAGAAGTTAAATTTAAA
TTCCTCAAAAGAAAACAGAATTTCCATCACTTCAAAAGGAATAAAAGCTGTGGCTTCATC
TTGTTCATATCTGCATGAAGCTTCTTTGAAAAGATGCTGCAATCTCACTGACGAAGGAGT
TCTTGCTCTTGCTCTCAATTGCCGGCTGCTAAAGATCATTGATTTAGGAGGCTGCTTAGG
GATTACTGATGTGTCCTTGCAGGCATTAGGAGAAAACTGCCCACTTTTGCAGTGTGTTGA
TTTTTCAGCCACTCAGGTATCTGACAGCGGCGTGGTTGCACTTGTTAGGGGACCTTGTGC
CAAGAAATTAGAGGAGATTCATATGGGACACTGTGTGAATCTGACCGATGAGGCTGTAGA
AGCTGTCCTTACTTGCTGTCCTCAGATATGTATATTACTCTTCCATGGATGCCCCCTGAT
AACAGATCATTCACGAGTAGTCTTGGAGCAATTAGTTGGACCAAACAAACTAAAGCAAGT
AACATGGACTGTGTATTGAAGCTTATTGAAGCTTATCAGAACTATGATCTTCACACTACT
TTTCCGGGAAACAATGGTCTTAGACATTGGCTTTCCAATAATATGATTTATGCTTCGAAG
TTATGCAAGCTCTTAAACGTGTTAATAGTGCTGTTATTTCTATGTTTGTTGCATCGGCAA
TTGTTCCTGAAGTGGTAATCCTAGCATGCCCTCAGATATATTTGGGGAGGATACTGTGTT
TGTTTGTTAAATAACGAAGTTGTAAATTACTTGTTTTCCCTGGAGATTGCCTTCTCCTAC
CTAGATATCTGAGCTGCTACAAGAGAAATTTACCAGTAGGGTAAACATTAGGAGAAATCG
AAGTAAAGTTATTTCTAAAAGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855918|ref|XP_596237.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855918|ref|XP_596237.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               61-193, gnl|bosTau2|chr5 (48255299-48255431)
               

               
               61-193, gnl|Hg17|chr12 (31753626-31753494)
               

               
               61-193, gnl|Mm7|chr6 (149263443-149263311)
               


               
               337-564, gnl|bosTau2|chr5 (48259288-48259515)
               

               
               337-564, gnl|Hg17|chr12 (31742160-31741933)
               

               
               337-564, gnl|Mm7|chr6 (149249371-149249144)
               


               
               724-1163, gnl|bosTau2|chr5 (45967420-45967854)
               

               
               724-1163, gnl|Hg17|chr12 (31716580-31716088)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-193, gnl|bosTau2|chr5 (48255299-48255431)
               

               
               61-193, gnl|Hg17|chr12 (31753626-31753494)
               

               
               61-193, gnl|Mm7|chr6 (149263443-149263311)
               


               
               337-564, gnl|bosTau2|chr5 (48259288-48259515)
               

               
               337-564, gnl|Hg17|chr12 (31742160-31741933)
               

               
               337-564, gnl|Mm7|chr6 (149249371-149249144)
               


               
               724-1163, gnl|bosTau2|chr5 (45967420-45967854)
               

               
               724-1163, gnl|Hg17|chr12 (31716580-31716088)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               spc (0.340097)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	61-193, gnl\|bosTau2\|chr5 (48255299-48255431)
	61-193, gnl\|Hg17\|chr12 (31753626-31753494)
	61-193, gnl\|Mm7\|chr6 (149263443-149263311)

	337-564, gnl\|bosTau2\|chr5 (48259288-48259515)
	337-564, gnl\|Hg17\|chr12 (31742160-31741933)
	337-564, gnl\|Mm7\|chr6 (149249371-149249144)

	724-1163, gnl\|bosTau2\|chr5 (45967420-45967854)
	724-1163, gnl\|Hg17\|chr12 (31716580-31716088)

	spc (0.340097)
	lin (0.291206)
	sug (0.254582)
	fcc (0.197785)
	col (0.195008)
	sto (0.179824)
	duo (0.172801)
	cki (0.165235)
	lun (0.150489)
	ste (0.135208)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	ecc (0.115035)
	eje (0.0988338)