Ss1.1-rsug13_e10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGAGGAGAGCAGGAACAGGAGCGGAGCGCAGTCCTCGGAGCCTTAGCTCCAGCATCC CGCCAGGGGTTGCAGGTGTGTGGGAGGCTTGAAACTATTCCAACATGGCTTTCCTTGGAT TCTTCTCTTTGCTGGTGCTGCAAAGTTTGGCCTTAGGGACCACTTTCACGGATGAAACTA TTACTGAGTTTTCAGTGAATATGTACAACCATCTTCGAGCCACTGGGGAAGATGAAAATA TTCTCTTCTCTCCATTGAGTGTCACCCTTGCAATGGGAATGCTGGAACTTGGGGCCCAAG GGTCTACCCTGAAAGAAATCCGTCATTCAATGGGATATGAGAGTCTGAAAAGTGGTGAAG AATTTTCTTTCCTGAAGGATCTTTCTCACATGGTAACTGCTGAAGAAAGCCAGTATGTGA TGAAAATTGCCAATTCCCTCTTTGTGCAAAATGGATTTCATGTCAATGATGAGTTTTTGC AAATGCTGAAAAAGTACTTTAATGCAGAAGTAAATCATGTGGACTTCAGCCAAAATGTAG CTGTGGCCAACTATATCAATAAATGGGTGGAGAATAACACAAATAGTCTTTTGAAAGATT TGCTATCCCCAACGGATTTTGATGCTGTCACTCATCTGGCCCTCATCAATGCTGTTTATT TTAAGGGAAACTGGAAGTCACAATTCAGACCTGAAAATACCAGAACGTTTTCCTTCACTA AAGATGATGAAAGTGAAGTCCAAATTCCAATGATGTATCAACAAGGAGAATTTTATTATG GGGAATTTAGTGATGGCTCCAATGAAGCTGGTGGTATCTACCAAGTCCTGGAAATACCCT ATGAGGGAGATGAGATAAGTATGATGCTGGTATTGTCCAGACAGGAAGTTCCACTGGCCA CCCTGGAGCCCTTGGTCAAAGCACAGCTCCTTGAAGAATGGGCCAACTCTGTGAAGAAGC AAAAAGTGGAAGTGTACCTGCCCAGGTTCACAGTGGAACAAGAAGTTGATTTAAAAAATG TTTTGAAGGCTCTTGGAATAACTGAAGTTTTCATCAAAAATGCAAACTTGACGGCCTTGT CTGATAACAAAGAGATTTTCCTTTCCAAAGCAATTCACAAGTCCTTCATAGAGGTTAATG AAGAAGGATCAGAAGCCGCTGCCGCTTCAGGAATGATTGCAATTAGCAGGATGGCTGTGC TATATCCTCAAGTTATTGTCGATCATCCATTTTTCTTTCTCATCAGGAACAGGAGATCAG GTACAATTCTATTCATGGGACGAGTCATGCATCCTGAAACCATGAACACAAGTGGACATG ATTTTGAGGAACTTTAAATTATTTTAGTTGAATAACAAGGAAGATAGTATCTAAGCACAT TATGTTTGCAACTAGTATATATTTGAGACTTGTGCTTTACAATGTATCTTAAGATAATAT TTAAAATAGCTTAGATAAAAACAATGTATGTAAATTGTAGGCCAACTTGTCAAGGAATGT TATCAGTATTATTGAAGTAATAGTCCCATCATGTCATTGTGTTTGTTGTGCTAGTATTTA AAATAAAAGTCCATAGTGAACATGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGAGGAGAGCAGGAACAGGAGCGGAGCGCAGTCCTCGGAGCCTTAGCTCCAGCATCC CGCCAGGGGTTGCAGGTGTGTGGGAGGCTTGAAACTATTCCAACATGGCTTTCCTTGGAT TCTTCTCTTTGCTGGTGCTGCAAAGTTTGGCCTTAGGGACCACTTTCACGGATGAAACTA TTACTGAGTTTTCAGTGAATATGTACAACCATCTTCGAGCCACTGGGGAAGATGAAAATA TTCTCTTCTCTCCATTGAGTGTCACCCTTGCAATGGGAATGCTGGAACTTGGGGCCCAAG GGTCTACCCTGAAAGAAATCCGTCATTCAATGGGATATGAGAGTCTGAAAAGTGGTGAAG AATTTTCTTTCCTGAAGGATCTTTCTCACATGGTAACTGCTGAAGAAAGCCAGTATGTGA TGAAAATTGCCAATTCCCTCTTTGTGCAAAATGGATTTCATGTCAATGATGAGTTTTTGC AAATGCTGAAAAAGTACTTTAATGCAGAAGTAAATCATGTGGACTTCAGCCAAAATGTAG CTGTGGCCAACTATATCAATAAATGGGTGGAGAATAACACAAATAGTCTTTTGAAAGATT TGCTATCCCCAACGGATTTTGATGCTGTCACTCATCTGGCCCTCATCAATGCTGTTTATT TTAAGGGAAACTGGAAGTCACAATTCAGACCTGAAAATACCAGAACGTTTTCCTTCACTA AAGATGATGAAAGTGAAGTCCAAATTCCAATGATGTATCAACAAGGAGAATTTTATTATG GGGAATTTAGTGATGGCTCCAATGAAGCTGGTGGTATCTACCAAGTCCTGGAAATACCCT ATGAGGGAGATGAGATAAGTATGATGCTGGTATTGTCCAGACAGGAAGTTCCACTGGCCA CCCTGGAGCCCTTGGTCAAAGCACAGCTCCTTGAAGAATGGGCCAACTCTGTGAAGAAGC AAAAAGTGGAAGTGTACCTGCCCAGGTTCACAGTGGAACAAGAAGTTGATTTAAAAAATG TTTTGAAGGCTCTTGGAATAACTGAAGTTTTCATCAAAAATGCAAACTTGACGGCCTTGT CTGATAACAAAGAGATTTTCCTTTCCAAAGCAATTCACAAGTCCTTCATAGAGGTTAATG AAGAAGGATCAGAAGCCGCTGCCGCTTCAGGAATGATTGCAATTAGCAGGATGGCTGTGC TATATCCTCAAGTTATTGTCGATCATCCATTTTTCTTTCTCATCAGGAACAGGAGATCAG GTACAATTCTATTCATGGGACGAGTCATGCATCCTGAAACCATGAACACAAGTGGACATG ATTTTGAGGAACTTTAAATTATTTTAGTTGAATAACAAGGAAGATAGTATCTAAGCACAT TATGTTTGCAACTAGTATATATTTGAGACTTGTGCTTTACAATGTATCTTAAGATAATAT TTAAAATAGCTTAGATAAAAACAATGTATGTAAATTGTAGGCCAACTTGTCAAGGAATGT TATCAGTATTATTGAAGTAATAGTCCCATCATGTCATTGTGTTTGTTGTGCTAGTATTTA AAATAAAAGTCCATAGTGAACATGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 164-283, + strand, RNAz p=0.752472 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 164-283, + strand, RNAz p=0.752472 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 85-356, gnl|bosTau2|chr1 (66321702-66321973) | |
| 85-356, gnl|Hg17|chr3 (168989599-168989870) | |
| 85-356, gnl|Mm7|chr3 (75718722-75718993) | |
| 772-987, gnl|bosTau2|chr1 (66327601-66327815) | |
| 772-987, gnl|canFam2|chr34 (35609869-35610112) | |
| 772-987, gnl|danRer3|chr2 (12884089-12883868) | |
| 772-987, gnl|echTel1|scaffold_188372 (1971-2213) | |
| 772-987, gnl|fr1|chrUn (254339921-254339681) | |
| 772-987, gnl|galGal2|chr9 (20054456-20054217) | |
| 772-987, gnl|hg17|chr3 (168995100-168995342) | |
| 772-987, gnl|Hg17|chr3 (168995103-168995316) | |
| 772-987, gnl|mm7|chr3 (75724750-75724994) | |
| 772-987, gnl|Mm7|chr3 (75724755-75724969) | |
| 772-987, gnl|monDom2|scaffold_52 (4668825-4668593) | |
| 772-987, gnl|oryCun1|scaffold_209545 (36199-36428) | |
| 772-987, gnl|panTro1|chr2 (172475231-172475473) | |
| 772-987, gnl|rheMac2|chr2 (119324611-119324369) | |
| 772-987, gnl|rn3|chr2 (166456682-166456926) | |
| 772-987, gnl|tetNig1|chrUn_random (139811390-139811168) | |
| 772-987, gnl|xenTro1|scaffold_3 (3462955-3462735) | |
| 1258-1584, gnl|bosTau2|chr1 (66351600-66351926) | |
| 1258-1584, gnl|Hg17|chr3 (169025734-169026056) | |
| 1258-1584, gnl|Mm7|chr3 (75746316-75746638) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-356, gnl|bosTau2|chr1 (66321702-66321973) | |
| 85-356, gnl|Hg17|chr3 (168989599-168989870) | |
| 85-356, gnl|Mm7|chr3 (75718722-75718993) | |
| 772-987, gnl|bosTau2|chr1 (66327601-66327815) | |
| 772-987, gnl|canFam2|chr34 (35609869-35610112) | |
| 772-987, gnl|danRer3|chr2 (12884089-12883868) | |
| 772-987, gnl|echTel1|scaffold_188372 (1971-2213) | |
| 772-987, gnl|fr1|chrUn (254339921-254339681) | |
| 772-987, gnl|galGal2|chr9 (20054456-20054217) | |
| 772-987, gnl|hg17|chr3 (168995100-168995342) | |
| 772-987, gnl|Hg17|chr3 (168995103-168995316) | |
| 772-987, gnl|mm7|chr3 (75724750-75724994) | |
| 772-987, gnl|Mm7|chr3 (75724755-75724969) | |
| 772-987, gnl|monDom2|scaffold_52 (4668825-4668593) | |
| 772-987, gnl|oryCun1|scaffold_209545 (36199-36428) | |
| 772-987, gnl|panTro1|chr2 (172475231-172475473) | |
| 772-987, gnl|rheMac2|chr2 (119324611-119324369) | |
| 772-987, gnl|rn3|chr2 (166456682-166456926) | |
| 772-987, gnl|tetNig1|chrUn_random (139811390-139811168) | |
| 772-987, gnl|xenTro1|scaffold_3 (3462955-3462735) | |
| 1258-1584, gnl|bosTau2|chr1 (66351600-66351926) | |
| 1258-1584, gnl|Hg17|chr3 (169025734-169026056) | |
| 1258-1584, gnl|Mm7|chr3 (75746316-75746638) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| fco (1.10046) | |
| pgl (0.947867) | |
| sag (0.730861) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| thg (0.253582) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| isp (0.150376) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (1.10046) | |
| pgl (0.947867) | |
| sag (0.730861) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| thg (0.253582) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| isp (0.150376) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |