Non-Coding RNA Search

Ss1.1-rsug13_j24.5

Sequence:


               
               TTTAAAGGACATCTGTGTATGGAAACATCTTTTCCCTGAAAAACAGCTATGTTAGGAATT
TGAGTGTCTAATCCTTCCTCCCCCGAATATCCTTACTACTCTTTTCTCCTAATATAGCAA
TTGTTGTATCACATGACTATAAACAAGATACCCAACCTCAGCGTAGCACATGCTATTAAT
TGGCTGTGGCATTTTCATTTTTCAAAGGATGGTTTTTAACTGAAGAATTAGATGTGAACC
CCAGTTTCTGTGCCGTTCAGTCACCCAGATCCTTAAACTTAACTATGGTACATAATATAC
ATGCTTAGAACTAACAGGTGTTTTTTTCTTAGTCACTTTAGAATTGAAAAAGTTTTTTTC
CTGCTGTATCCCTACTTTGAAGTGAAGTTAAACCATTCTAGGTAGTTTAAAATATTGGGG
ATAAGCACACCGTAAAAGATGTTTTCTAGCCCTGTATTTTACGACATTGGATACTTAAAA
TTTGGAGTATGCTCGCTCTTGAGGACAAAATTTGGGGTTGAGAGGGATGGTTGAGGCCAT
TATGAAATGGGAGAATCAGCATTTTAAACACTGTAAACATAAACACTTTCTTCTGCCTGC
TGTTTGTAAAAGCTCTTGGGGAAGATCTTTTACGAAGACCAATTTTTTAATGTAATTTAC
CTACCTAGTATAAGTGTCCTAAGACATGTATGTAAACTTCCAAGACTGTTTTGTCTGTGT
ATTTAGAAAATACACAAGAATCTTTATCAAACCTAAAAATATAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAGGACATCTGTGTATGGAAACATCTTTTCCCTGAAAAACAGCTATGTTAGGAATT
TGAGTGTCTAATCCTTCCTCCCCCGAATATCCTTACTACTCTTTTCTCCTAATATAGCAA
TTGTTGTATCACATGACTATAAACAAGATACCCAACCTCAGCGTAGCACATGCTATTAAT
TGGCTGTGGCATTTTCATTTTTCAAAGGATGGTTTTTAACTGAAGAATTAGATGTGAACC
CCAGTTTCTGTGCCGTTCAGTCACCCAGATCCTTAAACTTAACTATGGTACATAATATAC
ATGCTTAGAACTAACAGGTGTTTTTTTCTTAGTCACTTTAGAATTGAAAAAGTTTTTTTC
CTGCTGTATCCCTACTTTGAAGTGAAGTTAAACCATTCTAGGTAGTTTAAAATATTGGGG
ATAAGCACACCGTAAAAGATGTTTTCTAGCCCTGTATTTTACGACATTGGATACTTAAAA
TTTGGAGTATGCTCGCTCTTGAGGACAAAATTTGGGGTTGAGAGGGATGGTTGAGGCCAT
TATGAAATGGGAGAATCAGCATTTTAAACACTGTAAACATAAACACTTTCTTCTGCCTGC
TGTTTGTAAAAGCTCTTGGGGAAGATCTTTTACGAAGACCAATTTTTTAATGTAATTTAC
CTACCTAGTATAAGTGTCCTAAGACATGTATGTAAACTTCCAAGACTGTTTTGTCTGTGT
ATTTAGAAAATACACAAGAATCTTTATCAAACCTAAAAATATAAACTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               41-152, - strand, RNAz p=0.872314
               

               
               356-445, - strand, RNAz p=0.57051
               

               
               601-724, - strand, RNAz p=0.598269

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-152, - strand, RNAz p=0.872314
               

               
               356-445, - strand, RNAz p=0.57051
               

               
               601-724, - strand, RNAz p=0.598269

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-724, gnl|bosTau2|chr14 (24667741-24668473)
               

               
               1-724, gnl|canFam2|chr29 (30782466-30782975)
               

               
               1-724, gnl|dasNov1|scaffold_113220 (875-369)
               

               
               1-724, gnl|echTel1|scaffold_256563 (9700-10229)
               

               
               1-724, gnl|hg17|chr8 (81598061-81598560)
               

               
               1-724, gnl|Hg17|chr8 (81598072-81598768)
               

               
               1-724, gnl|loxAfr1|scaffold_208 (89785-90284)
               

               
               1-724, gnl|mm7|chr3 (9290956-9291380)
               

               
               1-724, gnl|Mm7|chr3 (9290962-9291598)
               

               
               1-724, gnl|monDom2|scaffold_4 (77384693-77384243)
               

               
               1-724, gnl|oryCun1|scaffold_195992 (1618-1090)
               

               
               1-724, gnl|panTro1|chr7 (83727174-83727675)
               

               
               1-724, gnl|rheMac2|chr8 (82951432-82951929)
               

               
               1-724, gnl|rn3|chr2 (94480536-94480105)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-724, gnl|bosTau2|chr14 (24667741-24668473)
               

               
               1-724, gnl|canFam2|chr29 (30782466-30782975)
               

               
               1-724, gnl|dasNov1|scaffold_113220 (875-369)
               

               
               1-724, gnl|echTel1|scaffold_256563 (9700-10229)
               

               
               1-724, gnl|hg17|chr8 (81598061-81598560)
               

               
               1-724, gnl|Hg17|chr8 (81598072-81598768)
               

               
               1-724, gnl|loxAfr1|scaffold_208 (89785-90284)
               

               
               1-724, gnl|mm7|chr3 (9290956-9291380)
               

               
               1-724, gnl|Mm7|chr3 (9290962-9291598)
               

               
               1-724, gnl|monDom2|scaffold_4 (77384693-77384243)
               

               
               1-724, gnl|oryCun1|scaffold_195992 (1618-1090)
               

               
               1-724, gnl|panTro1|chr7 (83727174-83727675)
               

               
               1-724, gnl|rheMac2|chr8 (82951432-82951929)
               

               
               1-724, gnl|rn3|chr2 (94480536-94480105)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               sug (0.509165)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.509165)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	41-152, - strand, RNAz p=0.872314
	356-445, - strand, RNAz p=0.57051
	601-724, - strand, RNAz p=0.598269

	1-724, gnl\|bosTau2\|chr14 (24667741-24668473)
	1-724, gnl\|canFam2\|chr29 (30782466-30782975)
	1-724, gnl\|dasNov1\|scaffold_113220 (875-369)
	1-724, gnl\|echTel1\|scaffold_256563 (9700-10229)
	1-724, gnl\|hg17\|chr8 (81598061-81598560)
	1-724, gnl\|Hg17\|chr8 (81598072-81598768)
	1-724, gnl\|loxAfr1\|scaffold_208 (89785-90284)
	1-724, gnl\|mm7\|chr3 (9290956-9291380)
	1-724, gnl\|Mm7\|chr3 (9290962-9291598)
	1-724, gnl\|monDom2\|scaffold_4 (77384693-77384243)
	1-724, gnl\|oryCun1\|scaffold_195992 (1618-1090)
	1-724, gnl\|panTro1\|chr7 (83727174-83727675)
	1-724, gnl\|rheMac2\|chr8 (82951432-82951929)
	1-724, gnl\|rn3\|chr2 (94480536-94480105)

	sug (0.509165)
	cte (0.29274)
	mgp (0.230681)
	sag (0.182715)
	sin (0.174948)
	fat (0.147427)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)