Non-Coding RNA Search

Ss1.1-rsug14_f23.5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTGGAGAGAATCCTTT
ATTATGTCACACTGAAACAAATACTTTTTTCAAGGACAGTAAGCACAGTCATTGCCACAA
GCATATTAATATATCTAATTTTTAATAAAGAATATGCTACAAGTCATGCTATTTATAGTT
TCAATAGCATTCTGGCAAAATTAAAGATATTTCCAGTTGTGTCAAATATTTGATGAATAG
TAAATTCTACTTTCTGCCTTTGGGTAAATAAATGGTGTCTTTCAGTGAAGTGGTGGAAAA
CAGGTCATGTGAGGGCTGCTTCTTAAATATGCCCTTTTCTCCAGGGACCATCAGCCCCTT
CGGTTACCACTGAACTTCTCAGCTATTTTCTGTAGTTCCAAATCCATTGCAGCCAAATTT
TCGAGTTCTTTTTCCTCCTCCTCTGTCAGAACTCCTTGGCCGGCCCTCTCCTTCTCACTC
TCTGCTGCGTGGCGTGGACTCAGGTGCTCCCCGGAGTCATAGAAGTCTGGAAACTCAGCT
GACTTCTTCCTGTAATGAAGAAGCTGGTCCAGTTCAGCCACTCTGTCATACTGCCTCTTC
AGATCCAGTTTGGGGGCCAGGTTTCTCTCCTCATATCCCCAGTTTACATCCTCCTCAAAG
GGCTTTTTCTCCCACCAGTCATAGCTGTATTCCGGGAAGAAAGTCTTCTCGTTCAAGGTC
ACCCCATTTGCATCTTCACCCTCAAGAAAATTGTCACCCACGTTGTCCTTCCTCTCGAAA
TGGCTGCTCTCCCACTGGGGTGGGACGTAGTATGGATTGAGTAGCTCCCCTAATCTCTTC
TTCTCAGGGATGCGATGGGCAGCATAGGGTTTGCCTGGAAGCCTGGCTTCCGCAGCGTGC
TCCCCAGGGCCTTGCAGGTCCTCCGGCTGCTGCCACCTGCCTGGGGCTCCTTCCTCCCCA
TTCTCCTCACCGCGGTTGAGGTAATTTCTCAGCTTGGCCTGTGGGTGGCGCCTTGCCTCG
TCCACCTGGCTTTCTGGAACAGGGCGGTGTGCTTCACCCCAGAACTGTTCCTCTTCTGCC
GGGTCAGGAGGGGCGTCGGCACGTGGCCCCCCTGCCCAGGCTCGGTGGTGCCGCTGCCCC
TCGTCGCCTCTCTCTTCCTCACTTTCCTCACTGTGTCCGGGCCCCTTATTCCTCAGCTCC
GAGCTGGCGCCCACCCTCCTGTCCTGCTCTGGGCTCTCCTCGCCGGGACGTCTTGCAGCC
CGGTGTTCCGCACCCCCTCTGCCCCCGTATCGTGCCCCCACCAGGTCCCCAGGAGCCTGG
ACCGAGGAGGAACTCCTCACTTCTTCCCCGTGTTCGGCTTCTTCTTCGGAAGCTGGGTAG
TGGGTAGGATGGCGGGTTCTCTGTCCCCCGGGGCTGGCCAGGCCCAACACTGACTCCTCA
GATTCCTCGCGGGGGTGTCCTCTCTCCTCGGGGGGAGGACTCCCTTCCTGAGGGGCTCTG
TCCGGCCTGCTCCTCCCGTGGTGATGCCTCGGCCTCCAGCGTCGTTTGTCCACCTCAAGG
CTGGCATCTTCCTGGCTTTCCTCAGGTGCCTCCTGACCCTCGGGTGGGCTTTCAGGCTCT
CCGGGTGCCGCGTCCTGGCTCCCGGTCTCCTCTCCACTCTCCTGGCTGCTCCTTTCCCGG
CTGTGTGTCTTCGCAGGGCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTGGAGAGAATCCTTT
ATTATGTCACACTGAAACAAATACTTTTTTCAAGGACAGTAAGCACAGTCATTGCCACAA
GCATATTAATATATCTAATTTTTAATAAAGAATATGCTACAAGTCATGCTATTTATAGTT
TCAATAGCATTCTGGCAAAATTAAAGATATTTCCAGTTGTGTCAAATATTTGATGAATAG
TAAATTCTACTTTCTGCCTTTGGGTAAATAAATGGTGTCTTTCAGTGAAGTGGTGGAAAA
CAGGTCATGTGAGGGCTGCTTCTTAAATATGCCCTTTTCTCCAGGGACCATCAGCCCCTT
CGGTTACCACTGAACTTCTCAGCTATTTTCTGTAGTTCCAAATCCATTGCAGCCAAATTT
TCGAGTTCTTTTTCCTCCTCCTCTGTCAGAACTCCTTGGCCGGCCCTCTCCTTCTCACTC
TCTGCTGCGTGGCGTGGACTCAGGTGCTCCCCGGAGTCATAGAAGTCTGGAAACTCAGCT
GACTTCTTCCTGTAATGAAGAAGCTGGTCCAGTTCAGCCACTCTGTCATACTGCCTCTTC
AGATCCAGTTTGGGGGCCAGGTTTCTCTCCTCATATCCCCAGTTTACATCCTCCTCAAAG
GGCTTTTTCTCCCACCAGTCATAGCTGTATTCCGGGAAGAAAGTCTTCTCGTTCAAGGTC
ACCCCATTTGCATCTTCACCCTCAAGAAAATTGTCACCCACGTTGTCCTTCCTCTCGAAA
TGGCTGCTCTCCCACTGGGGTGGGACGTAGTATGGATTGAGTAGCTCCCCTAATCTCTTC
TTCTCAGGGATGCGATGGGCAGCATAGGGTTTGCCTGGAAGCCTGGCTTCCGCAGCGTGC
TCCCCAGGGCCTTGCAGGTCCTCCGGCTGCTGCCACCTGCCTGGGGCTCCTTCCTCCCCA
TTCTCCTCACCGCGGTTGAGGTAATTTCTCAGCTTGGCCTGTGGGTGGCGCCTTGCCTCG
TCCACCTGGCTTTCTGGAACAGGGCGGTGTGCTTCACCCCAGAACTGTTCCTCTTCTGCC
GGGTCAGGAGGGGCGTCGGCACGTGGCCCCCCTGCCCAGGCTCGGTGGTGCCGCTGCCCC
TCGTCGCCTCTCTCTTCCTCACTTTCCTCACTGTGTCCGGGCCCCTTATTCCTCAGCTCC
GAGCTGGCGCCCACCCTCCTGTCCTGCTCTGGGCTCTCCTCGCCGGGACGTCTTGCAGCC
CGGTGTTCCGCACCCCCTCTGCCCCCGTATCGTGCCCCCACCAGGTCCCCAGGAGCCTGG
ACCGAGGAGGAACTCCTCACTTCTTCCCCGTGTTCGGCTTCTTCTTCGGAAGCTGGGTAG
TGGGTAGGATGGCGGGTTCTCTGTCCCCCGGGGCTGGCCAGGCCCAACACTGACTCCTCA
GATTCCTCGCGGGGGTGTCCTCTCTCCTCGGGGGGAGGACTCCCTTCCTGAGGGGCTCTG
TCCGGCCTGCTCCTCCCGTGGTGATGCCTCGGCCTCCAGCGTCGTTTGTCCACCTCAAGG
CTGGCATCTTCCTGGCTTTCCTCAGGTGCCTCCTGACCCTCGGGTGGGCTTTCAGGCTCT
CCGGGTGCCGCGTCCTGGCTCCCGGTCTCCTCTCCACTCTCCTGGCTGCTCCTTTCCCGG
CTGTGTGTCTTCGCAGGGCCCCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|223921|prf||1005178C

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|223921|prf||1005178C

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               627-740, - strand, RNAz p=0.520074

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               627-740, - strand, RNAz p=0.520074

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               434-1702, gnl|bosTau2|chr13 (33001429-33002667)
               

               
               434-1702, gnl|Hg17|chr20 (5852747-5851458)
               

               
               434-1702, gnl|Mm7|chr2 (132534949-132533654)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               434-1702, gnl|bosTau2|chr13 (33001429-33002667)
               

               
               434-1702, gnl|Hg17|chr20 (5852747-5851458)
               

               
               434-1702, gnl|Mm7|chr2 (132534949-132533654)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               pgl (17.5355)
               

               
               sug (8.6558)
               

               
               cbe (3.11005)
               

               
               fco (0.628832)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (17.5355)
               

               
               sug (8.6558)
               

               
               cbe (3.11005)
               

               
               fco (0.628832)
               

               
               spc (0.340097)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	434-1702, gnl\|bosTau2\|chr13 (33001429-33002667)
	434-1702, gnl\|Hg17\|chr20 (5852747-5851458)
	434-1702, gnl\|Mm7\|chr2 (132534949-132533654)

	pgl (17.5355)
	sug (8.6558)
	cbe (3.11005)
	fco (0.628832)
	spc (0.340097)
	fhi (0.339155)
	fce (0.271592)
	fcc (0.197785)
	fbs (0.175346)
	duo (0.172801)
	nco (0.161734)
	hyp (0.142837)
	ebs (0.118301)
	jca (0.11396)