Ss1.1-rsug14_n9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTTTTGAAAAAGATGCCAGTCCTTAATGTGGTAAATTAAGAATCCCATTTTGAATATA AATGCCAGTCTGACGGAAACGGCAGCTTTATATAATTGGTGAGAGATGTGAGAATTAATT CTATTTTTTGTCTTTTTAGGGCCGCACCCAGAGCATATGGAAGTTCCCAGGTTAGGGGTC ACATCGGAGCTGTGGCCACCGGCCTACACCACAACCACAGCCATGCCAGATCCCAGCCGA GTCTGCGACCTACACCACAGGCCACGGCAGTGCAGGATCCTTAACCCACTGAGCAAGGCC AGGGATCGAACCTGCATCCTCATGGATGCTAGTCGGGTTCATTACTGCTAAGCCACCTCA GGAACTCCAGAATTAACTTCTTGCAAGGGCCAAAGCCAGAGAATGTCTTCAAGCAACTTC AGTAAAGATATTTTAGCCACACATGAAGGTAACTGTTCGGTTAGATACCTTTGTCATAAT TGGAGGCCTAAAAATTGCAAAATAAGCACTAAATTATGTCCTTGTTATTTTATTATATGT ATTCACATTAACTATGGAAGGTTATTTTTCACACAGTTCTGTTGTCCTTAGAAATCTTAC CCAGCAAAATGTTTGCGGAAAAACTTGTCCTTATTGGATCTTTCATTTATTCTTGGTGTT AGACATTTGTTAAGGGAAACATTTTTTAAACAGCGCCCCCTTCCCTGGATGGCAACAGAG GAGGATTTGAAATGAGATGATGTTTACTGAGGCAAACACCTGAAAATTAAATCTGCACTT TATGAAAATGAATACTAACATTTTTTTCTCCCTCATTTTTTATATTACTTACTATATTAG CTAATGATCAAAAGTTGTTAAAATGACAAATTTATGATACAGAAATAAATGGAAATATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTTTTGAAAAAGATGCCAGTCCTTAATGTGGTAAATTAAGAATCCCATTTTGAATATA AATGCCAGTCTGACGGAAACGGCAGCTTTATATAATTGGTGAGAGATGTGAGAATTAATT CTATTTTTTGTCTTTTTAGGGCCGCACCCAGAGCATATGGAAGTTCCCAGGTTAGGGGTC ACATCGGAGCTGTGGCCACCGGCCTACACCACAACCACAGCCATGCCAGATCCCAGCCGA GTCTGCGACCTACACCACAGGCCACGGCAGTGCAGGATCCTTAACCCACTGAGCAAGGCC AGGGATCGAACCTGCATCCTCATGGATGCTAGTCGGGTTCATTACTGCTAAGCCACCTCA GGAACTCCAGAATTAACTTCTTGCAAGGGCCAAAGCCAGAGAATGTCTTCAAGCAACTTC AGTAAAGATATTTTAGCCACACATGAAGGTAACTGTTCGGTTAGATACCTTTGTCATAAT TGGAGGCCTAAAAATTGCAAAATAAGCACTAAATTATGTCCTTGTTATTTTATTATATGT ATTCACATTAACTATGGAAGGTTATTTTTCACACAGTTCTGTTGTCCTTAGAAATCTTAC CCAGCAAAATGTTTGCGGAAAAACTTGTCCTTATTGGATCTTTCATTTATTCTTGGTGTT AGACATTTGTTAAGGGAAACATTTTTTAAACAGCGCCCCCTTCCCTGGATGGCAACAGAG GAGGATTTGAAATGAGATGATGTTTACTGAGGCAAACACCTGAAAATTAAATCTGCACTT TATGAAAATGAATACTAACATTTTTTTCTCCCTCATTTTTTATATTACTTACTATATTAG CTAATGATCAAAAGTTGTTAAAATGACAAATTTATGATACAGAAATAAATGGAAATATTT |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-118, gnl|bosTau2|chr26 (26062200-26062080) | |
| 2-118, gnl|canFam2|chr28 (32369101-32369382) | |
| 2-118, gnl|canFam2|chr28 (32369101-32369382) | |
| 2-118, gnl|dasNov1|scaffold_144565 (1692-1375) | |
| 2-118, gnl|dasNov1|scaffold_144565 (1692-1375) | |
| 2-118, gnl|echTel1|scaffold_297356 (1047-1302) | |
| 2-118, gnl|echTel1|scaffold_310111 (73150-72843) | |
| 2-118, gnl|hg17|chr10 (120886828-120887119) | |
| 2-118, gnl|Hg17|chr10 (120886854-120886967) | |
| 2-118, gnl|hg17|chrX (129356418-129356709) | |
| 2-118, gnl|mm7|chr19 (60758310-60758685) | |
| 2-118, gnl|mm7|chr19 (60758310-60758685) | |
| 2-118, gnl|Mm7|chr19 (60758340-60758540) | |
| 2-118, gnl|monDom2|scaffold_14 (41269649-41269371) | |
| 2-118, gnl|monDom2|scaffold_14 (41269649-41269371) | |
| 2-118, gnl|oryCun1|scaffold_103044 (4727-4512) | |
| 2-118, gnl|oryCun1|scaffold_103044 (4727-4512) | |
| 2-118, gnl|panTro1|chr8_random (7883610-7883319) | |
| 2-118, gnl|panTro1|chr8_random (7883610-7883319) | |
| 2-118, gnl|rheMac2|chr1 (127469614-127469914) | |
| 2-118, gnl|rheMac2|chr9 (118758091-118758391) | |
| 2-118, gnl|rn3|chr1 (267651647-267652020) | |
| 2-118, gnl|rn3|chr1 (267651647-267652020) | |
| 369-900, gnl|bosTau2|chr26 (26062087-26061552) | |
| 369-900, gnl|Hg17|chr10 (120886961-120887476) | |
| 369-900, gnl|Mm7|chr19 (60758533-60759021) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-118, gnl|bosTau2|chr26 (26062200-26062080) | |
| 2-118, gnl|canFam2|chr28 (32369101-32369382) | |
| 2-118, gnl|canFam2|chr28 (32369101-32369382) | |
| 2-118, gnl|dasNov1|scaffold_144565 (1692-1375) | |
| 2-118, gnl|dasNov1|scaffold_144565 (1692-1375) | |
| 2-118, gnl|echTel1|scaffold_297356 (1047-1302) | |
| 2-118, gnl|echTel1|scaffold_310111 (73150-72843) | |
| 2-118, gnl|hg17|chr10 (120886828-120887119) | |
| 2-118, gnl|Hg17|chr10 (120886854-120886967) | |
| 2-118, gnl|hg17|chrX (129356418-129356709) | |
| 2-118, gnl|mm7|chr19 (60758310-60758685) | |
| 2-118, gnl|mm7|chr19 (60758310-60758685) | |
| 2-118, gnl|Mm7|chr19 (60758340-60758540) | |
| 2-118, gnl|monDom2|scaffold_14 (41269649-41269371) | |
| 2-118, gnl|monDom2|scaffold_14 (41269649-41269371) | |
| 2-118, gnl|oryCun1|scaffold_103044 (4727-4512) | |
| 2-118, gnl|oryCun1|scaffold_103044 (4727-4512) | |
| 2-118, gnl|panTro1|chr8_random (7883610-7883319) | |
| 2-118, gnl|panTro1|chr8_random (7883610-7883319) | |
| 2-118, gnl|rheMac2|chr1 (127469614-127469914) | |
| 2-118, gnl|rheMac2|chr9 (118758091-118758391) | |
| 2-118, gnl|rn3|chr1 (267651647-267652020) | |
| 2-118, gnl|rn3|chr1 (267651647-267652020) | |
| 369-900, gnl|bosTau2|chr26 (26062087-26061552) | |
| 369-900, gnl|Hg17|chr10 (120886961-120887476) | |
| 369-900, gnl|Mm7|chr19 (60758533-60759021) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| isp (0.601504) | |
| che (0.272628) | |
| sug (0.254582) | |
| tra (0.246184) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.601504) | |
| che (0.272628) | |
| sug (0.254582) | |
| tra (0.246184) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) |