Non-Coding RNA Search

Ss1.1-rsug15_i24.5.5

Sequence:


               
               GCGCTGGGCCTTCGGCTACGCACTGAGCAGGCCTCACCTGGGCCCTAGCCCCAAGCGCCC
CTCGCCGCGGCTCCAGGCGTCAGACCCGCGCACCGTCCCCCCACCCCGCACTCGCCGAGC
CTCCCCTTCTCGGCCGCTGCGGTGCGGCCTTCGTCGACACCCGTAGTTACCAACTGGCTA
TGGCCGTCCGGCTCCTGCGCGTCGCCTCCGCAGCCCTGGGCGACACGGCAGTTCGGTGGC
AGCCCCTCGTCGGACCCCGCGCGGGAAACCGGGGGCCGGGCGGGAGCATCTGGCTGGGTC
TGGGTGGCCGTGCGGCCGCAGCGCGGACGCTGAGCTTGTCGGCGCGCGCGTGGAGCAGCT
CAGAAGACAAAATAACAGTCCACTTTATAAACCGTGATGGTAAGACGTTAACAACCCAAG
GAAAAGTTGGCGACTCTCTACTAGATGTTGTGATTGAAAATAATCTAGATATTGATGGTT
TTGGTGCATGTGAGGGGACCTTGGCTTGCTCTACCTGTCACCTTATCTTTGAAGACCACA
TATTTGAGAAATTAGAAGCAATCACCGATGAGGAGAATGACATGCTGGATCTGGCATATG
GACTAACAGATAGATCACGGCTGGGCTGCCAAATCTGTTTGACAAAGGCTATGGACAATA
TGACCGTTCGAGTGCCTGAGGCTGTGGCCGATGCCAGAGAGTCCATTGATTTGGGCAAGA
ACTCCTCTAAACTAGAATAAATAGGAATATTTTCACAAAATGTTACCTATTTTTATAATT
ATTATTTCTTTATGTAATTAAATGAAAACATGGATGAATACATTTATTATTATGACTAGA
TTTACTACTTTAATTCGTCTTGTGTAGCTACTGCATTTTTAGTTTTGAAAATATACAATC
TTTATTTTGATTAAATTGTAAAACAAATCAAATATCAGAAAATAGTTAATATGATAAAAC
CTTACCTATTTTACCTATGTGTGATCAGTAATGTTAGCAAAATGTTTTCACATAAATCTT
ATGCCTAGTTACCTATAAAATAGGTTTTAAAAAAGGTACCAATGTCTCTGTTAGATGTGG
GTGGAGGCAGAGAGGTCAAATGGCTCACCTGGGGCCTCTCACAAATTAGAAGGTCTGTGC
TAGAACCGTCCCTTCCTACAGGTTATCTGTTCACACTGAAACTGGAGAAATTAGGAATAT
TTTATGTATAGAAGTAGTTAAACCTGAAGATGTATGGATAAAACGAATGGCTCAGTAAAC
TCATTTTGAAGACAGTTATGATCTAATACATAAGTATTTTAGAATTTTGAATCAGTAAAA
AGTACAAGTCTGAGCACGGTAATAGAGCACTGTCAGAGAAGTTTGGTCTCAGTTCTGTTT
GAACTGGGGGAATAAACCAAAAATTAGATGCCCCCTTTTTTTTTTTACTCCTAATCAGAG
TGGTCTGTCTTTGTCATTTTGAAAAAATAATGCTGATTTATAAACCTCTGCCTGTAACAG
AATGGACGTCTCATGGATCAGGTTTTCTCTGTCCTGAGCTGCAGAAGGAACCGAAGGGCT
GTGGCACTGCACAGCCTGGGGTGCTGGCTTCTCAGCCCCACAGTGTGCAGTGAGCCCGGA
GGCCACGGTCCCAGAGAGGGGAGGGTGCAGGCACCTCAGGTGGCCGTCTCTACATGGCAG
CCCTTGTACTTGATCTTCTCTGTGAATAAACTCGTACATGATAATGAAAGGGTGCTAAGT
ATGCTCTGGGAAGTGTAATAAAACATCAGCTAGTTTGCACTAAGGGTGGGAAAGGGCAGA
ACAAACCAGTAAAAAGTGAATTATGAGACACTTGCACCAGCTTCAGGTACCTTGTGCACT
TGGAGCATTTGCACCAGTGTTTGTCCGGGACAGTATTTAACCTACACCGTTGTGTTCCCC
CATTGGAAGTACTGAGATGAACACCATCAGGAATGCGCTCAGGGAGCTAGCCCCTTATCA
GGAAAAGATAAAACATATGTTTGCACAAATCATTTGCTTCAACCAAACTGACCAATTTGC
CAAATAGAATACTTTAATTATTACATAAAAAGTGATGAAGGAAGAACTCAGGGCTTCTAA
TATTCATTTGACACTTGAAAACCATCAAGTGCCCTAGCACTCTGAAAGAACTTCACAACA
ATCTGTTCTCTTGACCAGCATTCTCCTTCTATGCGTCCATGGATTCCCTACATTCTCCTT
TCCAGAGCACTTTAATGATGACATACAGCCTAAGCGCTCTGAAATTTAGTCTAATTGTCT
CAGATTGAAAATTAAGAGAGCTTCTTATTAATGAAGTTTAATTGTATTACTTAAATAAAA
CTCACTAAACTTTTAAGTGGAGGATATAGCCTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGGGCCTTCGGCTACGCACTGAGCAGGCCTCACCTGGGCCCTAGCCCCAAGCGCCC
CTCGCCGCGGCTCCAGGCGTCAGACCCGCGCACCGTCCCCCCACCCCGCACTCGCCGAGC
CTCCCCTTCTCGGCCGCTGCGGTGCGGCCTTCGTCGACACCCGTAGTTACCAACTGGCTA
TGGCCGTCCGGCTCCTGCGCGTCGCCTCCGCAGCCCTGGGCGACACGGCAGTTCGGTGGC
AGCCCCTCGTCGGACCCCGCGCGGGAAACCGGGGGCCGGGCGGGAGCATCTGGCTGGGTC
TGGGTGGCCGTGCGGCCGCAGCGCGGACGCTGAGCTTGTCGGCGCGCGCGTGGAGCAGCT
CAGAAGACAAAATAACAGTCCACTTTATAAACCGTGATGGTAAGACGTTAACAACCCAAG
GAAAAGTTGGCGACTCTCTACTAGATGTTGTGATTGAAAATAATCTAGATATTGATGGTT
TTGGTGCATGTGAGGGGACCTTGGCTTGCTCTACCTGTCACCTTATCTTTGAAGACCACA
TATTTGAGAAATTAGAAGCAATCACCGATGAGGAGAATGACATGCTGGATCTGGCATATG
GACTAACAGATAGATCACGGCTGGGCTGCCAAATCTGTTTGACAAAGGCTATGGACAATA
TGACCGTTCGAGTGCCTGAGGCTGTGGCCGATGCCAGAGAGTCCATTGATTTGGGCAAGA
ACTCCTCTAAACTAGAATAAATAGGAATATTTTCACAAAATGTTACCTATTTTTATAATT
ATTATTTCTTTATGTAATTAAATGAAAACATGGATGAATACATTTATTATTATGACTAGA
TTTACTACTTTAATTCGTCTTGTGTAGCTACTGCATTTTTAGTTTTGAAAATATACAATC
TTTATTTTGATTAAATTGTAAAACAAATCAAATATCAGAAAATAGTTAATATGATAAAAC
CTTACCTATTTTACCTATGTGTGATCAGTAATGTTAGCAAAATGTTTTCACATAAATCTT
ATGCCTAGTTACCTATAAAATAGGTTTTAAAAAAGGTACCAATGTCTCTGTTAGATGTGG
GTGGAGGCAGAGAGGTCAAATGGCTCACCTGGGGCCTCTCACAAATTAGAAGGTCTGTGC
TAGAACCGTCCCTTCCTACAGGTTATCTGTTCACACTGAAACTGGAGAAATTAGGAATAT
TTTATGTATAGAAGTAGTTAAACCTGAAGATGTATGGATAAAACGAATGGCTCAGTAAAC
TCATTTTGAAGACAGTTATGATCTAATACATAAGTATTTTAGAATTTTGAATCAGTAAAA
AGTACAAGTCTGAGCACGGTAATAGAGCACTGTCAGAGAAGTTTGGTCTCAGTTCTGTTT
GAACTGGGGGAATAAACCAAAAATTAGATGCCCCCTTTTTTTTTTTACTCCTAATCAGAG
TGGTCTGTCTTTGTCATTTTGAAAAAATAATGCTGATTTATAAACCTCTGCCTGTAACAG
AATGGACGTCTCATGGATCAGGTTTTCTCTGTCCTGAGCTGCAGAAGGAACCGAAGGGCT
GTGGCACTGCACAGCCTGGGGTGCTGGCTTCTCAGCCCCACAGTGTGCAGTGAGCCCGGA
GGCCACGGTCCCAGAGAGGGGAGGGTGCAGGCACCTCAGGTGGCCGTCTCTACATGGCAG
CCCTTGTACTTGATCTTCTCTGTGAATAAACTCGTACATGATAATGAAAGGGTGCTAAGT
ATGCTCTGGGAAGTGTAATAAAACATCAGCTAGTTTGCACTAAGGGTGGGAAAGGGCAGA
ACAAACCAGTAAAAAGTGAATTATGAGACACTTGCACCAGCTTCAGGTACCTTGTGCACT
TGGAGCATTTGCACCAGTGTTTGTCCGGGACAGTATTTAACCTACACCGTTGTGTTCCCC
CATTGGAAGTACTGAGATGAACACCATCAGGAATGCGCTCAGGGAGCTAGCCCCTTATCA
GGAAAAGATAAAACATATGTTTGCACAAATCATTTGCTTCAACCAAACTGACCAATTTGC
CAAATAGAATACTTTAATTATTACATAAAAAGTGATGAAGGAAGAACTCAGGGCTTCTAA
TATTCATTTGACACTTGAAAACCATCAAGTGCCCTAGCACTCTGAAAGAACTTCACAACA
ATCTGTTCTCTTGACCAGCATTCTCCTTCTATGCGTCCATGGATTCCCTACATTCTCCTT
TCCAGAGCACTTTAATGATGACATACAGCCTAAGCGCTCTGAAATTTAGTCTAATTGTCT
CAGATTGAAAATTAAGAGAGCTTCTTATTAATGAAGTTTAATTGTATTACTTAAATAAAA
CTCACTAAACTTTTAAGTGGAGGATATAGCCTATAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               ADX_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               ADX_PIG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               612-1149, gnl|bosTau2|chr15 (8933648-8934162)
               

               
               612-1149, gnl|Hg17|chr11 (109838286-109838847)
               


               
               1326-1877, gnl|bosTau2|chr15 (8934205-8934735)
               

               
               1326-1877, gnl|Hg17|chr11 (109839014-109841068)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               612-1149, gnl|bosTau2|chr15 (8933648-8934162)
               

               
               612-1149, gnl|Hg17|chr11 (109838286-109838847)
               


               
               1326-1877, gnl|bosTau2|chr15 (8934205-8934735)
               

               
               1326-1877, gnl|Hg17|chr11 (109839014-109841068)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

Help | Less info


               
               sug (7.89206)
               

               
               cte (2.34192)
               

               
               cov (1.45368)
               

               
               ova (1.16219)
               

               
               cag (0.907167)
               

               
               cki (0.660939)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (7.89206)
               

               
               cte (2.34192)
               

               
               cov (1.45368)
               

               
               ova (1.16219)
               

               
               cag (0.907167)
               

               
               cki (0.660939)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	612-1149, gnl\|bosTau2\|chr15 (8933648-8934162)
	612-1149, gnl\|Hg17\|chr11 (109838286-109838847)

	1326-1877, gnl\|bosTau2\|chr15 (8934205-8934735)
	1326-1877, gnl\|Hg17\|chr11 (109839014-109841068)

	sug (7.89206)
	cte (2.34192)
	cov (1.45368)
	ova (1.16219)
	cag (0.907167)
	cki (0.660939)
	sag (0.548145)
	pro (0.512033)
	amn (0.417711)
	pla (0.401016)
	ute (0.398353)
	aor (0.390549)
	spc (0.340097)
	sme (0.305437)
	bfe (0.299715)
	lin (0.291206)
	lyg (0.266205)
	ece (0.229305)
	tes (0.207814)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	mgm (0.180343)
	sto (0.179824)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	nco (0.161734)
	fco (0.157208)
	cli (0.152812)
	eli (0.151814)
	fat (0.147427)
	liv (0.146284)
	pty (0.142714)
	cst (0.140036)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	jca (0.11396)