Ss1.1-rsug15_k23.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ATTATCATCATGGAATAGGTCAATCCTTTTCAGGTGATTATCATGAGTATTTTGGATTAC ATGTAGATGAGGAAGCTTTGACTTATCTCATGTTGGCAAATCATTTGATTCACACGCTGT ATCCAGATTCTATAACAATAGCTGAGGATGTATCAGGAATGCCAACTCTGTGTTCTCCTA TTTCCCAGGGAGGGAGTGGCTTTGACTATCGATTAGCCATGGCAATTCCAGATAAATGGA TCCAGCTACTTAAAGAATTTAAAGATGAAGACTGGAATATGGGCAATATAGTGTATACAC TCACAAACAGACGCCACCTTGAAAAGAGCATTGCTTATGCAGAGAGCCATGATCAGGCAC TTGTTGGGGATAAGACACTGGCGTTTTGGTTGATGGATGCTGAAATGTATACCAACATGA GTGTCCTGACCCCGTTTACTCCAGTTATTGATCGTGGAATACAGCTTCATAAAATGATTC GACTCATTACTCATACACTTGGTGGAGAAGGCTATCTCAATTTCATGGGTAATGAATTTG GGCATCCTGAATGGTTAGACTTCCCAAGAAAAGGAAATGACGAGAGCTACCATTATGCAA GAAGGCAGTTTCATTTAACTGATGACGACCTTCTTCGCTATAAGTTCCTAAATAACTTTG ACAGGGATATGAATAAATTGGAAGAAAGATGTGGTTGGCTTTCAGCTCCACAGGCCCATG TGAGTGAAAAGCATGAAACCAATAAGGTCATTGCTTTTGAGAGAGCAGGTCTTCTTTTTG TTTTCAATTTTCATCCAAGCAAGAGCTACACTGATTACCGAGTTGGAACGACATTGCCAG GAAAGTTCAAAATTGTGCTAGATTCAGATGCAGCAGAATATGGAGGACACCAGAGACTGG ACCACAATACCGACTTCTTCTCTGAACCTTTTGAACATAATAAGCGTCCCTACTCTCTTT TGGTGTACATTCCAAACCGAGTGGCCCTCATCCTTCAGAACGTGGACCCGCCCAACTGAA GAGTCTGATTTCAGCTCCACAAGAGGAAGATGCGCGCTTTGTTTTCCCACACTTATTGTC ACAGAGCTTATAATGTGCAAGCTTTTCAAAATATATTTGTCTAGGCAAAATGTCAGATGT CTGAAATTCAATATTGGCTTATGAAAATGAATGTCAGAGTTTTCTTTAAGGAGTAGAGGG GGTCATAGTTTTGAAATTTTACAGATTCTAGACTATATCTTCCAGCCATCTGGACAGCTA GGTGTCTCAAATGAAGTGCCATATATATATATAAAATTATGTGTTTAAATAGTTTTGTCT TACTGGCCAATTATGTGATCCTTTTAAGTTCAAATTTGAATCATGTGTCATGTTTGATTA TTTCTGTTGAATGTATAAGTATTTTTTTTAATGGCAGATATTCTATGACTTTATTCTAAT GTCTCTTGGTCTAAATAACAGAATGCCAAGACTGTTATTCTCCTTTATCAAATTGTGTTT AGAAATACTGTAATAAGTATATAGTCATAATATAAAACTAAGAATTGTGTCAAAGTTAAT ATAAAGTCATTGCCTATGAATTCAGCCATGCCTTATTTTGCATAAGTTTTATCTTGTGTT CTCTTGTTCACGTACTATCTTGGTAGACGCTAATATCTCCTTTTCTGAGGTTAATTGTAA CATTTCACAAGATATCTTTTACTTTCAGTCAATAAAAATAAAGCAAAATTGCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ATTATCATCATGGAATAGGTCAATCCTTTTCAGGTGATTATCATGAGTATTTTGGATTAC ATGTAGATGAGGAAGCTTTGACTTATCTCATGTTGGCAAATCATTTGATTCACACGCTGT ATCCAGATTCTATAACAATAGCTGAGGATGTATCAGGAATGCCAACTCTGTGTTCTCCTA TTTCCCAGGGAGGGAGTGGCTTTGACTATCGATTAGCCATGGCAATTCCAGATAAATGGA TCCAGCTACTTAAAGAATTTAAAGATGAAGACTGGAATATGGGCAATATAGTGTATACAC TCACAAACAGACGCCACCTTGAAAAGAGCATTGCTTATGCAGAGAGCCATGATCAGGCAC TTGTTGGGGATAAGACACTGGCGTTTTGGTTGATGGATGCTGAAATGTATACCAACATGA GTGTCCTGACCCCGTTTACTCCAGTTATTGATCGTGGAATACAGCTTCATAAAATGATTC GACTCATTACTCATACACTTGGTGGAGAAGGCTATCTCAATTTCATGGGTAATGAATTTG GGCATCCTGAATGGTTAGACTTCCCAAGAAAAGGAAATGACGAGAGCTACCATTATGCAA GAAGGCAGTTTCATTTAACTGATGACGACCTTCTTCGCTATAAGTTCCTAAATAACTTTG ACAGGGATATGAATAAATTGGAAGAAAGATGTGGTTGGCTTTCAGCTCCACAGGCCCATG TGAGTGAAAAGCATGAAACCAATAAGGTCATTGCTTTTGAGAGAGCAGGTCTTCTTTTTG TTTTCAATTTTCATCCAAGCAAGAGCTACACTGATTACCGAGTTGGAACGACATTGCCAG GAAAGTTCAAAATTGTGCTAGATTCAGATGCAGCAGAATATGGAGGACACCAGAGACTGG ACCACAATACCGACTTCTTCTCTGAACCTTTTGAACATAATAAGCGTCCCTACTCTCTTT TGGTGTACATTCCAAACCGAGTGGCCCTCATCCTTCAGAACGTGGACCCGCCCAACTGAA GAGTCTGATTTCAGCTCCACAAGAGGAAGATGCGCGCTTTGTTTTCCCACACTTATTGTC ACAGAGCTTATAATGTGCAAGCTTTTCAAAATATATTTGTCTAGGCAAAATGTCAGATGT CTGAAATTCAATATTGGCTTATGAAAATGAATGTCAGAGTTTTCTTTAAGGAGTAGAGGG GGTCATAGTTTTGAAATTTTACAGATTCTAGACTATATCTTCCAGCCATCTGGACAGCTA GGTGTCTCAAATGAAGTGCCATATATATATATAAAATTATGTGTTTAAATAGTTTTGTCT TACTGGCCAATTATGTGATCCTTTTAAGTTCAAATTTGAATCATGTGTCATGTTTGATTA TTTCTGTTGAATGTATAAGTATTTTTTTTAATGGCAGATATTCTATGACTTTATTCTAAT GTCTCTTGGTCTAAATAACAGAATGCCAAGACTGTTATTCTCCTTTATCAAATTGTGTTT AGAAATACTGTAATAAGTATATAGTCATAATATAAAACTAAGAATTGTGTCAAAGTTAAT ATAAAGTCATTGCCTATGAATTCAGCCATGCCTTATTTTGCATAAGTTTTATCTTGTGTT CTCTTGTTCACGTACTATCTTGGTAGACGCTAATATCTCCTTTTCTGAGGTTAATTGTAA CATTTCACAAGATATCTTTTACTTTCAGTCAATAAAAATAAAGCAAAATTGCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 40 entry(ies) | More info |
Aligned organism(s): 40 entry(ies) | Help | Less info |
27-147, gnl|bosTau2|chr1 (15606669-15606789) | |
27-147, gnl|Hg17|chr3 (81722997-81722877) | |
27-147, gnl|Mm7|chr16 (70477318-70477438) | |
237-357, gnl|bosTau2|chr1 (15618681-15618801) | |
237-357, gnl|canFam2|chr31 (8938660-8938541) | |
237-357, gnl|danRer3|chr10 (11043695-11043576) | |
237-357, gnl|echTel1|scaffold_194193 (4999-5118) | |
237-357, gnl|fr1|chrUn (54554591-54554476) | |
237-357, gnl|galGal2|chr1 (89115275-89115154) | |
237-357, gnl|hg17|chr3 (81713001-81713120) | |
237-357, gnl|Hg17|chr3 (81713125-81713005) | |
237-357, gnl|loxAfr1|scaffold_45059 (1320-1201) | |
237-357, gnl|mm7|chr16 (70485540-70485421) | |
237-357, gnl|Mm7|chr16 (70485414-70485534) | |
237-357, gnl|monDom2|scaffold_25 (4181465-4181589) | |
237-357, gnl|panTro1|chr2 (83947656-83947775) | |
237-357, gnl|rheMac2|chr2 (5907087-5907206) | |
237-357, gnl|tetNig1|chr16 (6002859-6002974) | |
237-357, gnl|xenTro1|scaffold_179 (1717875-1717756) | |
528-714, gnl|bosTau2|chr1 (15666800-15666986) | |
528-714, gnl|canFam2|chr31 (8980057-8979851) | |
528-714, gnl|danRer3|chr10 (11065375-11065161) | |
528-714, gnl|echTel1|scaffold_237146 (2525-2722) | |
528-714, gnl|fr1|chrUn (54560525-54560311) | |
528-714, gnl|galGal2|chr1 (89149137-89148931) | |
528-714, gnl|hg17|chr3 (81668746-81668952) | |
528-714, gnl|Hg17|chr3 (81668937-81668751) | |
528-714, gnl|loxAfr1|scaffold_2634 (73704-73506) | |
528-714, gnl|mm7|chr16 (70520798-70520595) | |
528-714, gnl|Mm7|chr16 (70520605-70520791) | |
528-714, gnl|monDom2|scaffold_25 (4139815-4140019) | |
528-714, gnl|oryCun1|scaffold_209828 (4610-4404) | |
528-714, gnl|panTro1|chr2 (83900820-83901026) | |
528-714, gnl|rheMac2|chr2 (5861488-5861694) | |
528-714, gnl|rn3|chr11 (8948107-8947904) | |
528-714, gnl|tetNig1|chr16 (5997417-5997621) | |
528-714, gnl|xenTro1|scaffold_179 (1728323-1728119) | |
962-1722, gnl|bosTau2|chr1 (15737996-15738754) | |
962-1722, gnl|Hg17|chr3 (81622305-81621554) | |
962-1722, gnl|Mm7|chr16 (70562477-70563191) |
Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
27-147, gnl|bosTau2|chr1 (15606669-15606789) | |
27-147, gnl|Hg17|chr3 (81722997-81722877) | |
27-147, gnl|Mm7|chr16 (70477318-70477438) | |
237-357, gnl|bosTau2|chr1 (15618681-15618801) | |
237-357, gnl|canFam2|chr31 (8938660-8938541) | |
237-357, gnl|danRer3|chr10 (11043695-11043576) | |
237-357, gnl|echTel1|scaffold_194193 (4999-5118) | |
237-357, gnl|fr1|chrUn (54554591-54554476) | |
237-357, gnl|galGal2|chr1 (89115275-89115154) | |
237-357, gnl|hg17|chr3 (81713001-81713120) | |
237-357, gnl|Hg17|chr3 (81713125-81713005) | |
237-357, gnl|loxAfr1|scaffold_45059 (1320-1201) | |
237-357, gnl|mm7|chr16 (70485540-70485421) | |
237-357, gnl|Mm7|chr16 (70485414-70485534) | |
237-357, gnl|monDom2|scaffold_25 (4181465-4181589) | |
237-357, gnl|panTro1|chr2 (83947656-83947775) | |
237-357, gnl|rheMac2|chr2 (5907087-5907206) | |
237-357, gnl|tetNig1|chr16 (6002859-6002974) | |
237-357, gnl|xenTro1|scaffold_179 (1717875-1717756) | |
528-714, gnl|bosTau2|chr1 (15666800-15666986) | |
528-714, gnl|canFam2|chr31 (8980057-8979851) | |
528-714, gnl|danRer3|chr10 (11065375-11065161) | |
528-714, gnl|echTel1|scaffold_237146 (2525-2722) | |
528-714, gnl|fr1|chrUn (54560525-54560311) | |
528-714, gnl|galGal2|chr1 (89149137-89148931) | |
528-714, gnl|hg17|chr3 (81668746-81668952) | |
528-714, gnl|Hg17|chr3 (81668937-81668751) | |
528-714, gnl|loxAfr1|scaffold_2634 (73704-73506) | |
528-714, gnl|mm7|chr16 (70520798-70520595) | |
528-714, gnl|Mm7|chr16 (70520605-70520791) | |
528-714, gnl|monDom2|scaffold_25 (4139815-4140019) | |
528-714, gnl|oryCun1|scaffold_209828 (4610-4404) | |
528-714, gnl|panTro1|chr2 (83900820-83901026) | |
528-714, gnl|rheMac2|chr2 (5861488-5861694) | |
528-714, gnl|rn3|chr11 (8948107-8947904) | |
528-714, gnl|tetNig1|chr16 (5997417-5997621) | |
528-714, gnl|xenTro1|scaffold_179 (1728323-1728119) | |
962-1722, gnl|bosTau2|chr1 (15737996-15738754) | |
962-1722, gnl|Hg17|chr3 (81622305-81621554) | |
962-1722, gnl|Mm7|chr16 (70562477-70563191) |
Expressed library(ies): 29 entry(ies) | More info |
Expressed library(ies): 29 entry(ies) | Help | Less info |
ret (0.514933) | |
sug (0.509165) | |
fat (0.442282) | |
kid (0.389206) | |
cty (0.31224) | |
isp (0.300752) | |
tra (0.246184) | |
mgp (0.230681) | |
cbl (0.229595) | |
col (0.195008) | |
cmu (0.186393) | |
sag (0.182715) | |
mgm (0.180343) | |
fbs (0.175346) | |
sin (0.174948) | |
rec (0.17307) | |
mga (0.160205) | |
fco (0.157208) | |
tbr (0.154178) | |
eli (0.151814) | |
ski (0.146735) | |
liv (0.146284) | |
lin (0.145603) | |
ssp (0.13552) | |
ste (0.135208) | |
lyg (0.133103) | |
eru (0.120048) | |
pgl (0.118483) | |
ldo (0.0970026) |
Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ret (0.514933) | |
sug (0.509165) | |
fat (0.442282) | |
kid (0.389206) | |
cty (0.31224) | |
isp (0.300752) | |
tra (0.246184) | |
mgp (0.230681) | |
cbl (0.229595) | |
col (0.195008) | |
cmu (0.186393) | |
sag (0.182715) | |
mgm (0.180343) | |
fbs (0.175346) | |
sin (0.174948) | |
rec (0.17307) | |
mga (0.160205) | |
fco (0.157208) | |
tbr (0.154178) | |
eli (0.151814) | |
ski (0.146735) | |
liv (0.146284) | |
lin (0.145603) | |
ssp (0.13552) | |
ste (0.135208) | |
lyg (0.133103) | |
eru (0.120048) | |
pgl (0.118483) | |
ldo (0.0970026) |