Non-Coding RNA Search

Ss1.1-rsug15_o5.5

Sequence:


               
               GCGACGTGGGGGAGTTTATCATCGCTGCTGCTCAAGACGGGGCGTGGGCCGGGTACCCTG
AACTGCTGGCCATGGGGCAGATGCTGAATGTGAATATACATCTAACTACTGGAGGGAGGC
TGGAGAGCCCCACCGTGTCTACCATGATTCACTATTTGGGCCCTGAGGATTCCCTAAGGC
CTAGCATTTGGCTCAGTTGGCTCAGTAACGGACATTATGACGCGGTGTTTGATCACTCCT
ATCCTAATCCGGAGTATGACACTTGGTGCAGGCAGACTCAAGTGCAAAGAAAACGCGATG
AAGAACTCGCCAAATCCATGGCCATATCCCTGTCCAAAATGTATATTGAACAAAATGCAT
GCTCTTGAAGTGTCTGAAAAGCTCCGCCCTGGGAGAATTGCATACCTAGTTTGTGTTTGG
AGAATTACATGAACTCTAATCAGGGTAATAGCACTTTTAAAGTTTCTAGTAGATTTACCG
TAGGTGTAATGCCTTAATCATTTTTTTGAATGTTTTCTCCTCAGAGCTAAAGGTTGCTGG
GCACCTAAATGATGTTTCATGATAGCTTTGGGTGATCCTACTGCTATTTATGATTTGCTG
TATAAAAAGTTGTCACTACTTAATTTGCAAGTTGATTTCTCACAGTGTAAATTTGTTCGT
TCCTGGTAATCTATTTTCTATAAAATTGTATTTTTGCACAACATTTTTAACAATTGGTGT
ACCTTCATCTATGACGTGTTCCATTTTGACAAAAGCTTTCCGGCATAAATCCAGAGAAGT
GCTTTATATGAAGTTTATTATTTTGAACAGAGTTTGTGATCTAGTATTTTATGTTGTTGA
ATTTTACAATACTTGGATATTTCAAATGGATATTGATGCATTTATGTTATCTGATTGGCC
CATTCCATTTTGATGAAACAGATTTTTTGTTTTGAAAATGTTATTTTTCTAGAAATGGTC
AGCTTTTAAAGAAATACACTTAAGGGGAGGTTGTGGGAAGGTTTTTTTTTTTTCCTTTAA
GGGATAGTACCACTCGCTCTTGAAATGAAAGTCTGATATTTGCTGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGACGTGGGGGAGTTTATCATCGCTGCTGCTCAAGACGGGGCGTGGGCCGGGTACCCTG
AACTGCTGGCCATGGGGCAGATGCTGAATGTGAATATACATCTAACTACTGGAGGGAGGC
TGGAGAGCCCCACCGTGTCTACCATGATTCACTATTTGGGCCCTGAGGATTCCCTAAGGC
CTAGCATTTGGCTCAGTTGGCTCAGTAACGGACATTATGACGCGGTGTTTGATCACTCCT
ATCCTAATCCGGAGTATGACACTTGGTGCAGGCAGACTCAAGTGCAAAGAAAACGCGATG
AAGAACTCGCCAAATCCATGGCCATATCCCTGTCCAAAATGTATATTGAACAAAATGCAT
GCTCTTGAAGTGTCTGAAAAGCTCCGCCCTGGGAGAATTGCATACCTAGTTTGTGTTTGG
AGAATTACATGAACTCTAATCAGGGTAATAGCACTTTTAAAGTTTCTAGTAGATTTACCG
TAGGTGTAATGCCTTAATCATTTTTTTGAATGTTTTCTCCTCAGAGCTAAAGGTTGCTGG
GCACCTAAATGATGTTTCATGATAGCTTTGGGTGATCCTACTGCTATTTATGATTTGCTG
TATAAAAAGTTGTCACTACTTAATTTGCAAGTTGATTTCTCACAGTGTAAATTTGTTCGT
TCCTGGTAATCTATTTTCTATAAAATTGTATTTTTGCACAACATTTTTAACAATTGGTGT
ACCTTCATCTATGACGTGTTCCATTTTGACAAAAGCTTTCCGGCATAAATCCAGAGAAGT
GCTTTATATGAAGTTTATTATTTTGAACAGAGTTTGTGATCTAGTATTTTATGTTGTTGA
ATTTTACAATACTTGGATATTTCAAATGGATATTGATGCATTTATGTTATCTGATTGGCC
CATTCCATTTTGATGAAACAGATTTTTTGTTTTGAAAATGTTATTTTTCTAGAAATGGTC
AGCTTTTAAAGAAATACACTTAAGGGGAGGTTGTGGGAAGGTTTTTTTTTTTTCCTTTAA
GGGATAGTACCACTCGCTCTTGAAATGAAAGTCTGATATTTGCTGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12855994|dbj|BAB30530.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12855994|dbj|BAB30530.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-596, + strand, RNAz p=0.524734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-596, + strand, RNAz p=0.524734

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB188491, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB188491, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1066, gnl|bosTau2|chr13 (11448209-11447139)
               

               
               1-1066, gnl|Hg17|chr10 (23769471-23770586)
               

               
               1-1066, gnl|Mm7|chr2 (19724218-19725275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1066, gnl|bosTau2|chr13 (11448209-11447139)
               

               
               1-1066, gnl|Hg17|chr10 (23769471-23770586)
               

               
               1-1066, gnl|Mm7|chr2 (19724218-19725275)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sme (1.22175)
               

               
               tbr (0.462535)
               

               
               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (1.22175)
               

               
               tbr (0.462535)
               

               
               bfe (0.299715)
               

               
               tes (0.207814)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-1066, gnl\|bosTau2\|chr13 (11448209-11447139)
	1-1066, gnl\|Hg17\|chr10 (23769471-23770586)
	1-1066, gnl\|Mm7\|chr2 (19724218-19725275)

	sme (1.22175)
	tbr (0.462535)
	bfe (0.299715)
	tes (0.207814)
	eli (0.151814)
	fat (0.147427)
	che (0.136314)
	ste (0.135208)
	sug (0.127291)
	ecc (0.115035)
	ldo (0.0970026)