Non-Coding RNA Search

Ss1.1-rsug15_p9.5

Sequence:


               
               ACGGACTGCTTAGTACCTGTCGAGAACTCTCTCGAGCCACTGCTGAGCTGGAACGAGCAT
GGAGAGAATATGATAAGTTAGAATATGATGTAACTGTTACCAGGAACCAGATGCAAGAAC
AGCTAGATCGCCTTGGTGAAGTTCAGACTGAATCAGCAGGAATTCAGCGTGCGCAAATTC
AGAAAGAACTGTGGGGAATTCAGGACGTCATGGAAGGACTGAGTAAACACAAACAGCAGA
GAGGCTCTGCGGAAACAGGTATGGCAGGATCAAAGCCTTTCTCAACAGTTAAATACAAAA
ACGAGGGTCCAGATTATAGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAG
TTGATGAGTCTAATGGAGAAGAAAAATCAGAACCTGTTTCAGAAATGGAATCTTCCGTCA
AAGGTTCCCACTTTCCTGTTGGAGTAGTACCTCCAAGAACAAAATCACCAACACCCGAAT
CTTCGACAATAGCCTCATATGTAACCTTAAGGAAAACTAAGAAGATGATGGATTCAAGAA
CGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGCACTCGTCCTAGGA
TGACCGTGGAAGAGCAAATGGAAAGAATCAGGAGGCATCAACAAGCATGCTTAAGGGAAA
AGAAAAAAGGATTAAATGTTATTGGTGCTTTAGACCAGTCACCCTTACCAAGTCCTTCCA
ATTTAAGGGATAGTCTATTCAGGGTTACCCAGACTCGAAGGAAGGATGATAACATTAAGG
ACACTGTTGTTCGGGAACCTGATGCAAAGCCAGACCCTGAAACTCCTGCTGCAGAAGTTG
TTCTACTGAAAGAAGCAGAACCTCAAAATACAGATTTCAGTGAAGAGTTTAAAAAAACTG
AAAATGTTTTTTCCAAAACACTTTTCACACCTGAGCCAAATGGAATCACTTCTGAGGACG
TGATGGATAAAGAAGAAAGTAAAGAAAAAATGCCTGAGGATGTTTCATACAGTAGCCCTC
CAGATGAGTCACAGATCACAAATCATAAACCAGAAGGCCACCCTGAAGAAAATATTAAAG
ACGATATTCGTGATCAGGAAGAAACTGTTATTTCGTATGAACTAACTCCTGAGGCTTCTA
GAGGAAATCAGACAATGGCAGTGAAAAGCCTGTCCCCGTCTCCCGAGTCCCCAGCGTCCC
CTGTTCCGTCCACGCAGCCCCAGCTCACAGAAGGATCACATTTCATGTGTGTGTAGTCTC
AGAAAAACTATACTGACTTCTGTTGAAACCACTCAAAGCTATGGACGTGGACCTTTGGCA
ATGTGAGAAGATATTGTACAGTATATTTTAAATCTATGAAATTCATAGTTTTGATGCTTT
TGACCACAGAGCATCATTTTATCACTTCTGGAAAATGTTTATTCCAAAACAGCTTTAATG
GCCCATATGTACACTCAAGGTTATGTAATGTACTCTCAAGGTAATTATTCTGACACCAGC
TTGCTGCTATGATTTCAGAGCACATAAGTAAAGGTGCTTTTTAGTGTGCGGTCTACAGCC
AGAGCTTACTTAGTTGCTGATTTCCAGATTTTGACGTTTCTAAAGTCTAGGTGGGTTTAT
ATTTCTTTTTTGCTTTTCGGTACATAAATTTAGTTATTATTTCCAACGAAGCTTGTTTTT
CTTTCTTTTTCTTCTTCTTCCCATTTTGGCTACTGCGATGCTTTGTTTCACCCTTGATTT
GTAAAAATTTTATATATATTTAAAATGTGCCATTTTATTACTGCTAAGTGAAGTTTGTCC
GTTTTCTGCTATAATTATTTCTCAGTCAGATTGCGATGTCAGTAGTTACTGCCACACTCT
TGTCAGCTTCAACACAAATGTTACCGCTTACTTTTTCTTAAAGAACAATTTAAAATGTAG
GTATTTCGAAGTACTGGGCTTATGCCTCATTGGACTAGATGTGTACAGCAATAAGCAGGT
TTTCAAATCCAGTACTTAGTTTGTGTACAAATGTAATTATGTTCATTGTGTATATATTAT
ACAATGAGCACATGTAATGTAAGTATTAAAGGCTACTTACTATTGTTTAAATGCAAATGT
TCATATCTCATTTCTTTTTTATCATGTTAAATAAATGTTGATGTTCTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGACTGCTTAGTACCTGTCGAGAACTCTCTCGAGCCACTGCTGAGCTGGAACGAGCAT
GGAGAGAATATGATAAGTTAGAATATGATGTAACTGTTACCAGGAACCAGATGCAAGAAC
AGCTAGATCGCCTTGGTGAAGTTCAGACTGAATCAGCAGGAATTCAGCGTGCGCAAATTC
AGAAAGAACTGTGGGGAATTCAGGACGTCATGGAAGGACTGAGTAAACACAAACAGCAGA
GAGGCTCTGCGGAAACAGGTATGGCAGGATCAAAGCCTTTCTCAACAGTTAAATACAAAA
ACGAGGGTCCAGATTATAGACTCTACAAGAGTGAACCAGAGTTAACAACAGTGGCAGAAG
TTGATGAGTCTAATGGAGAAGAAAAATCAGAACCTGTTTCAGAAATGGAATCTTCCGTCA
AAGGTTCCCACTTTCCTGTTGGAGTAGTACCTCCAAGAACAAAATCACCAACACCCGAAT
CTTCGACAATAGCCTCATATGTAACCTTAAGGAAAACTAAGAAGATGATGGATTCAAGAA
CGGAAAGACCAAGAAGTGCAGTGGAACAGCTCTGTTTGGCTGAAAGCACTCGTCCTAGGA
TGACCGTGGAAGAGCAAATGGAAAGAATCAGGAGGCATCAACAAGCATGCTTAAGGGAAA
AGAAAAAAGGATTAAATGTTATTGGTGCTTTAGACCAGTCACCCTTACCAAGTCCTTCCA
ATTTAAGGGATAGTCTATTCAGGGTTACCCAGACTCGAAGGAAGGATGATAACATTAAGG
ACACTGTTGTTCGGGAACCTGATGCAAAGCCAGACCCTGAAACTCCTGCTGCAGAAGTTG
TTCTACTGAAAGAAGCAGAACCTCAAAATACAGATTTCAGTGAAGAGTTTAAAAAAACTG
AAAATGTTTTTTCCAAAACACTTTTCACACCTGAGCCAAATGGAATCACTTCTGAGGACG
TGATGGATAAAGAAGAAAGTAAAGAAAAAATGCCTGAGGATGTTTCATACAGTAGCCCTC
CAGATGAGTCACAGATCACAAATCATAAACCAGAAGGCCACCCTGAAGAAAATATTAAAG
ACGATATTCGTGATCAGGAAGAAACTGTTATTTCGTATGAACTAACTCCTGAGGCTTCTA
GAGGAAATCAGACAATGGCAGTGAAAAGCCTGTCCCCGTCTCCCGAGTCCCCAGCGTCCC
CTGTTCCGTCCACGCAGCCCCAGCTCACAGAAGGATCACATTTCATGTGTGTGTAGTCTC
AGAAAAACTATACTGACTTCTGTTGAAACCACTCAAAGCTATGGACGTGGACCTTTGGCA
ATGTGAGAAGATATTGTACAGTATATTTTAAATCTATGAAATTCATAGTTTTGATGCTTT
TGACCACAGAGCATCATTTTATCACTTCTGGAAAATGTTTATTCCAAAACAGCTTTAATG
GCCCATATGTACACTCAAGGTTATGTAATGTACTCTCAAGGTAATTATTCTGACACCAGC
TTGCTGCTATGATTTCAGAGCACATAAGTAAAGGTGCTTTTTAGTGTGCGGTCTACAGCC
AGAGCTTACTTAGTTGCTGATTTCCAGATTTTGACGTTTCTAAAGTCTAGGTGGGTTTAT
ATTTCTTTTTTGCTTTTCGGTACATAAATTTAGTTATTATTTCCAACGAAGCTTGTTTTT
CTTTCTTTTTCTTCTTCTTCCCATTTTGGCTACTGCGATGCTTTGTTTCACCCTTGATTT
GTAAAAATTTTATATATATTTAAAATGTGCCATTTTATTACTGCTAAGTGAAGTTTGTCC
GTTTTCTGCTATAATTATTTCTCAGTCAGATTGCGATGTCAGTAGTTACTGCCACACTCT
TGTCAGCTTCAACACAAATGTTACCGCTTACTTTTTCTTAAAGAACAATTTAAAATGTAG
GTATTTCGAAGTACTGGGCTTATGCCTCATTGGACTAGATGTGTACAGCAATAAGCAGGT
TTTCAAATCCAGTACTTAGTTTGTGTACAAATGTAATTATGTTCATTGTGTATATATTAT
ACAATGAGCACATGTAATGTAAGTATTAAAGGCTACTTACTATTGTTTAAATGCAAATGT
TCATATCTCATTTCTTTTTTATCATGTTAAATAAATGTTGATGTTCTTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887771|ref|XP_586538.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887771|ref|XP_586538.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1174-1290, - strand, RNAz p=0.833691
               

               
               1910-2101, + strand, RNAz p=0.994204

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1174-1290, - strand, RNAz p=0.833691
               

               
               1910-2101, + strand, RNAz p=0.994204

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_019012, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_019012, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1135-2101, gnl|bosTau2|chr3 (16759385-16760306)
               

               
               1135-2101, gnl|Hg17|chr12 (19419730-19420563)
               

               
               1135-2101, gnl|Mm7|chr6 (140640415-140641240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1135-2101, gnl|bosTau2|chr3 (16759385-16760306)
               

               
               1135-2101, gnl|Hg17|chr12 (19419730-19420563)
               

               
               1135-2101, gnl|Mm7|chr6 (140640415-140641240)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               tra (0.369276)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1174-1290, - strand, RNAz p=0.833691
	1910-2101, + strand, RNAz p=0.994204

	1135-2101, gnl\|bosTau2\|chr3 (16759385-16760306)
	1135-2101, gnl\|Hg17\|chr12 (19419730-19420563)
	1135-2101, gnl\|Mm7\|chr6 (140640415-140641240)

	tra (0.369276)
	liv (0.292569)
	lin (0.291206)
	lyg (0.266205)
	ecc (0.23007)
	eje (0.197668)
	aor (0.195274)
	mgm (0.180343)
	fty (0.17584)
	sin (0.174948)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)