Non-Coding RNA Search

Ss1.1-rsug17_g7.5

Sequence:


               
               CCAGAAGACACACCTCACACAACACCAGAGAACACATTCAGGAGAGAGACCCTATGTCTG
CCATGACTGTGGAAAAACCTTTTCCCAGAAGTCAGCACTGAATGACCATCAGAAAATTCA
CACAGGCGTGAAACTCTATAAGTGTAACGAGTGTGGGAAATGCTTCTGCCGAAAGTCTAC
TCTGACTACACATCAGAGGACACACACAGGGGAGAAACCCTACGAATGTAATGAATGTGG
GAAGTTCTTCTCTAGGCTTTCATATCTCACTGTACATTATAGAACTCATTCAGGAGAGAA
ACCCTATGAATGTAATGAATGTGGGAAAACTTTCTATCTGAACTCAGCCCTCATGAGACA
CCAGAGAGTACACACAGGGGAGAAACCCTATGAATGTAATGAGTGTGGAAAATTATTCTC
CCAGTTGTCATACCTCACTATTCATCATAGAACACACTCAGGAGTGAAACCCTATGAATG
TAATGAATGTGGGAAAACTTTCTACCAGAATTCAGCCCTTTGTAGACATCGGAGAATACA
TAAAGGCGAGAAGCCCTATGAATGTTACATATGTGGGAAGTTCTTCTCTCAGATGTCATA
CCTCACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGG
AAAAACCTTCTGCCAGAATTCAGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TCGGATGTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAAGACACACCTCACACAACACCAGAGAACACATTCAGGAGAGAGACCCTATGTCTG
CCATGACTGTGGAAAAACCTTTTCCCAGAAGTCAGCACTGAATGACCATCAGAAAATTCA
CACAGGCGTGAAACTCTATAAGTGTAACGAGTGTGGGAAATGCTTCTGCCGAAAGTCTAC
TCTGACTACACATCAGAGGACACACACAGGGGAGAAACCCTACGAATGTAATGAATGTGG
GAAGTTCTTCTCTAGGCTTTCATATCTCACTGTACATTATAGAACTCATTCAGGAGAGAA
ACCCTATGAATGTAATGAATGTGGGAAAACTTTCTATCTGAACTCAGCCCTCATGAGACA
CCAGAGAGTACACACAGGGGAGAAACCCTATGAATGTAATGAGTGTGGAAAATTATTCTC
CCAGTTGTCATACCTCACTATTCATCATAGAACACACTCAGGAGTGAAACCCTATGAATG
TAATGAATGTGGGAAAACTTTCTACCAGAATTCAGCCCTTTGTAGACATCGGAGAATACA
TAAAGGCGAGAAGCCCTATGAATGTTACATATGTGGGAAGTTCTTCTCTCAGATGTCATA
CCTCACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAATGAATGTGG
AAAAACCTTCTGCCAGAATTCAGC------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TCGGATGTCATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087765|ref|XP_546994.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087765|ref|XP_546994.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-694, gnl|bosTau2|chr17 (22552809-22552116)
               

               
               1-694, gnl|Mm7|chr5 (109294569-109295256)
               


               
               23-686, gnl|bosTau2|chr10 (8996783-8996120)
               

               
               23-686, gnl|Hg17|chr19 (42818588-42817841)
               

               
               23-686, gnl|Mm7|chr2 (127310214-127309635)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr17 (22552809-22552116)
               

               
               1-694, gnl|Mm7|chr5 (109294569-109295256)
               


               
               23-686, gnl|bosTau2|chr10 (8996783-8996120)
               

               
               23-686, gnl|Hg17|chr19 (42818588-42817841)
               

               
               23-686, gnl|Mm7|chr2 (127310214-127309635)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               med (0.116252)

	1-694, gnl\|bosTau2\|chr17 (22552809-22552116)
	1-694, gnl\|Mm7\|chr5 (109294569-109295256)

	23-686, gnl\|bosTau2\|chr10 (8996783-8996120)
	23-686, gnl\|Hg17\|chr19 (42818588-42817841)
	23-686, gnl\|Mm7\|chr2 (127310214-127309635)