Non-Coding RNA Search

Ss1.1-rsug17_k4.5

Sequence:


               
               GGAAACTCTATATGCCACGGGTGCAGCCATAAAATGACAAAAAACAGAACATCTGTTAAC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAAACGAAACAAAACCAAAGAACA
AAAACAACACTGAGGTCAGATTCACTATTCCTTACCTCTCTTGCACAGGCCAGGTGGACA
GTGGGCAACAGCAGGATTCCTAAGCACTTGATGAATGACAACAGTAATACAGTAGTAAAA
CTGCATAACCATGAACCTCAGAGAAAGGACAGCAGACATTCCATAAAGACTTACAGCAAT
TGAAAACAGAGAAAAGGAGATGAAGTCTTTAAGGCTAAGAGAACCACAAGCAGCAGCAGA
ATCCATCCACCAGGGCTACATTAACCAGAAGAATCCAACGTTCTCAGGGCACCCAAAATA
GCTATCTACCTTCTCAGCTACAAGTATACAGGCAGGTAATACTACTGACAGGAGCGGCAT
CTTCCATTTGGAAACTGAACAATAACCTGTATATAAGAAAAACACATTCTATTTTGGGGC
TCATCTCAGAAACTCCCAGGAACCTAGGACTTAAAGAAGAGAAAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACTCTATATGCCACGGGTGCAGCCATAAAATGACAAAAAACAGAACATCTGTTAAC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAAACGAAACAAAACCAAAGAACA
AAAACAACACTGAGGTCAGATTCACTATTCCTTACCTCTCTTGCACAGGCCAGGTGGACA
GTGGGCAACAGCAGGATTCCTAAGCACTTGATGAATGACAACAGTAATACAGTAGTAAAA
CTGCATAACCATGAACCTCAGAGAAAGGACAGCAGACATTCCATAAAGACTTACAGCAAT
TGAAAACAGAGAAAAGGAGATGAAGTCTTTAAGGCTAAGAGAACCACAAGCAGCAGCAGA
ATCCATCCACCAGGGCTACATTAACCAGAAGAATCCAACGTTCTCAGGGCACCCAAAATA
GCTATCTACCTTCTCAGCTACAAGTATACAGGCAGGTAATACTACTGACAGGAGCGGCAT
CTTCCATTTGGAAACTGAACAATAACCTGTATATAAGAAAAACACATTCTATTTTGGGGC
TCATCTCAGAAACTCCCAGGAACCTAGGACTTAAAGAAGAGAAAGGTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-539, gnl|bosTau2|chr10 (12264901-12265349)
               

               
               90-539, gnl|Hg17|chr14 (23773593-23773147)
               

               
               90-539, gnl|Mm7|chr14 (50541290-50540867)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-539, gnl|bosTau2|chr10 (12264901-12265349)
               

               
               90-539, gnl|Hg17|chr14 (23773593-23773147)
               

               
               90-539, gnl|Mm7|chr14 (50541290-50540867)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               sug (0.127291)

	90-539, gnl\|bosTau2\|chr10 (12264901-12265349)
	90-539, gnl\|Hg17\|chr14 (23773593-23773147)
	90-539, gnl\|Mm7\|chr14 (50541290-50540867)