Non-Coding RNA Search

Ss1.1-rsug17_m4.5

Sequence:


               
               GCCACAGGTGCGGCCCTAAAATGACCACAACCAAAATCATTAGTGAACTGCCGTTCAGCA
TGGATGGCTTAAATTTAATTGAACATGAGGTTCCGTTTCTTAACTGATTGGCCACTATGA
AAAGATGCACCAATGCTCATAAGCAGAGTAAGAAAATTTAAAGGTTACACAAAGCTGTAG
TCCACAGGTCAGGAAGTGCTGTTTACTTTAAACCACCTGCAAGTCAGGGGCAATGAAATT
CACAAAAACTGTCCTGCTAAGAACTTTATATAAAGATTTCCATTCTTTTTTACCAATGGG
GAACACCTTAATGTTTAATATTTAAACTGTTTGTATCATTTTTCTAATGTATAATTTGTA
TAGCCAGGGTAAAATACGTACGGTGGCCATGCTGGTGTTATAAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACAGGTGCGGCCCTAAAATGACCACAACCAAAATCATTAGTGAACTGCCGTTCAGCA
TGGATGGCTTAAATTTAATTGAACATGAGGTTCCGTTTCTTAACTGATTGGCCACTATGA
AAAGATGCACCAATGCTCATAAGCAGAGTAAGAAAATTTAAAGGTTACACAAAGCTGTAG
TCCACAGGTCAGGAAGTGCTGTTTACTTTAAACCACCTGCAAGTCAGGGGCAATGAAATT
CACAAAAACTGTCCTGCTAAGAACTTTATATAAAGATTTCCATTCTTTTTTACCAATGGG
GAACACCTTAATGTTTAATATTTAAACTGTTTGTATCATTTTTCTAATGTATAATTTGTA
TAGCCAGGGTAAAATACGTACGGTGGCCATGCTGGTGTTATAAGTAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               32-408, gnl|bosTau2|chr21 (36500563-36500185)
               

               
               32-408, gnl|canFam2|chr8 (4318103-4318350)
               

               
               32-408, gnl|dasNov1|scaffold_12274 (51449-51231)
               

               
               32-408, gnl|echTel1|scaffold_302368 (12512-12227)
               

               
               32-408, gnl|hg17|chr14 (91597593-91597856)
               

               
               32-408, gnl|Hg17|chr14 (91597972-91597599)
               

               
               32-408, gnl|loxAfr1|scaffold_79959 (787-1055)
               

               
               32-408, gnl|mm7|chr12 (99416025-99416298)
               

               
               32-408, gnl|Mm7|chr12 (99416414-99415966)
               

               
               32-408, gnl|monDom2|scaffold_8 (29927679-29927990)
               

               
               32-408, gnl|oryCun1|scaffold_175818 (4778-4532)
               

               
               32-408, gnl|panTro1|chr15 (91976332-91976599)
               

               
               32-408, gnl|rn3|chr6 (126199289-126199529)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-408, gnl|bosTau2|chr21 (36500563-36500185)
               

               
               32-408, gnl|canFam2|chr8 (4318103-4318350)
               

               
               32-408, gnl|dasNov1|scaffold_12274 (51449-51231)
               

               
               32-408, gnl|echTel1|scaffold_302368 (12512-12227)
               

               
               32-408, gnl|hg17|chr14 (91597593-91597856)
               

               
               32-408, gnl|Hg17|chr14 (91597972-91597599)
               

               
               32-408, gnl|loxAfr1|scaffold_79959 (787-1055)
               

               
               32-408, gnl|mm7|chr12 (99416025-99416298)
               

               
               32-408, gnl|Mm7|chr12 (99416414-99415966)
               

               
               32-408, gnl|monDom2|scaffold_8 (29927679-29927990)
               

               
               32-408, gnl|oryCun1|scaffold_175818 (4778-4532)
               

               
               32-408, gnl|panTro1|chr15 (91976332-91976599)
               

               
               32-408, gnl|rn3|chr6 (126199289-126199529)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               sug (0.127291)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               cbl (0.114797)

	32-408, gnl\|bosTau2\|chr21 (36500563-36500185)
	32-408, gnl\|canFam2\|chr8 (4318103-4318350)
	32-408, gnl\|dasNov1\|scaffold_12274 (51449-51231)
	32-408, gnl\|echTel1\|scaffold_302368 (12512-12227)
	32-408, gnl\|hg17\|chr14 (91597593-91597856)
	32-408, gnl\|Hg17\|chr14 (91597972-91597599)
	32-408, gnl\|loxAfr1\|scaffold_79959 (787-1055)
	32-408, gnl\|mm7\|chr12 (99416025-99416298)
	32-408, gnl\|Mm7\|chr12 (99416414-99415966)
	32-408, gnl\|monDom2\|scaffold_8 (29927679-29927990)
	32-408, gnl\|oryCun1\|scaffold_175818 (4778-4532)
	32-408, gnl\|panTro1\|chr15 (91976332-91976599)
	32-408, gnl\|rn3\|chr6 (126199289-126199529)