Ss1.1-rsug18_b5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCATCACTAACCGGAGAGGAGGTGGGAAGCCTCACAAGAGGGGCCTCTCTGTGAGGA AAGGCAAGAAGTCCAGGGAATACGCGTCCTTGAGAACACTGTGGATTAAAACCGTGGACG AGGTGTTCAAGAATGCCCAGCCCCCAATTCGGGATGCCACAGACCTGAGGGAGAACATGC AGAATGCCGTCGTGTCTTTCAAGGAGCTGTGCGGCCTCTCGTCCGTGGCCAACCTCATGC AGTGCATGCTGGCGGTGTCTCCCCGCTTCCTGGGACCCGATAACACGCCCCTGGTGGTCC TGAATCTCAGCGAGCAGTACCCCACGATGGAGTTGCAGGGAATCGTGCCCGAGGTGCTGA AGAAGATCGTGACGACTTACGACATGATGATCCAGTCCCTCAAGGCCTTGATTGAGAATG CGGACGCAGTGTATGAAAAGATTGTGCACTGTCAGAAGGCAGCCATGGAATTCCACGAAC ACTTGCACAGCATAGGCACCAAGGAAGGCTTGAAGGAACGCAAACTGCAAAAAGCAGTGG AGAGCTTTACCTGGAATATTACCATCTTAAAGGGACAAGCGGATCTCTTGAAGTATGCCA AGAATGAGACTGTGGAGAACCTGAAGCAGATCCACTACGCGGCTGTTTCCTGTGGGCTCA ATAAACCGGGCACAGAAAATGCCGACATTCAGAAGCCACGCCGGAGCCTCGAAGTCATAC CTGAAAAAGCAAATGATGAAACTGGAGAATGAGGGAGCTCTCTCGAGATCATTATGGAGT TTATAACTCCAGGACCAACTGCAGTCAGATGGGACATTTGCTTTGCACTCACTAATGAAA ATAATATTGGAGATTTTAAAGCACAACTGGAATAGCTATTGCAGTCTCTTAAAACTGTGA ATGTATGTAGCAACCCTGCGTGTGGAGGCAAATAAACTCTTTAACAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCATCACTAACCGGAGAGGAGGTGGGAAGCCTCACAAGAGGGGCCTCTCTGTGAGGA AAGGCAAGAAGTCCAGGGAATACGCGTCCTTGAGAACACTGTGGATTAAAACCGTGGACG AGGTGTTCAAGAATGCCCAGCCCCCAATTCGGGATGCCACAGACCTGAGGGAGAACATGC AGAATGCCGTCGTGTCTTTCAAGGAGCTGTGCGGCCTCTCGTCCGTGGCCAACCTCATGC AGTGCATGCTGGCGGTGTCTCCCCGCTTCCTGGGACCCGATAACACGCCCCTGGTGGTCC TGAATCTCAGCGAGCAGTACCCCACGATGGAGTTGCAGGGAATCGTGCCCGAGGTGCTGA AGAAGATCGTGACGACTTACGACATGATGATCCAGTCCCTCAAGGCCTTGATTGAGAATG CGGACGCAGTGTATGAAAAGATTGTGCACTGTCAGAAGGCAGCCATGGAATTCCACGAAC ACTTGCACAGCATAGGCACCAAGGAAGGCTTGAAGGAACGCAAACTGCAAAAAGCAGTGG AGAGCTTTACCTGGAATATTACCATCTTAAAGGGACAAGCGGATCTCTTGAAGTATGCCA AGAATGAGACTGTGGAGAACCTGAAGCAGATCCACTACGCGGCTGTTTCCTGTGGGCTCA ATAAACCGGGCACAGAAAATGCCGACATTCAGAAGCCACGCCGGAGCCTCGAAGTCATAC CTGAAAAAGCAAATGATGAAACTGGAGAATGAGGGAGCTCTCTCGAGATCATTATGGAGT TTATAACTCCAGGACCAACTGCAGTCAGATGGGACATTTGCTTTGCACTCACTAATGAAA ATAATATTGGAGATTTTAAAGCACAACTGGAATAGCTATTGCAGTCTCTTAAAACTGTGA ATGTATGTAGCAACCCTGCGTGTGGAGGCAAATAAACTCTTTAACAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr1 (27193266-27193447) | |
| 1-182, gnl|canFam2|chr23 (28935276-28934219) | |
| 1-182, gnl|danRer3|chr6 (16813782-16812725) | |
| 1-182, gnl|dasNov1|scaffold_20579 (45171-44128) | |
| 1-182, gnl|echTel1|scaffold_295459 (13012-14072) | |
| 1-182, gnl|fr1|chrUn (96616870-96617927) | |
| 1-182, gnl|galGal2|chr2 (33728378-33729435) | |
| 1-182, gnl|hg17|chr3 (17027602-17028659) | |
| 1-182, gnl|Hg17|chr3 (17028475-17028656) | |
| 1-182, gnl|loxAfr1|scaffold_752 (135887-136945) | |
| 1-182, gnl|mm7|chr17 (48755685-48756742) | |
| 1-182, gnl|Mm7|chr17 (48756558-48756739) | |
| 1-182, gnl|monDom2|scaffold_7 (72554509-72555566) | |
| 1-182, gnl|oryCun1|scaffold_190060 (13499-14542) | |
| 1-182, gnl|panTro1|chr2 (17719933-17720990) | |
| 1-182, gnl|rheMac2|chr2 (159313419-159314476) | |
| 1-182, gnl|rn3|chr9 (4768016-4766959) | |
| 1-182, gnl|tetNig1|chrUn_random (32073171-32072114) | |
| 1-182, gnl|xenTro1|scaffold_543 (791473-790416) | |
| 571-724, gnl|bosTau2|chr1 (27313852-27314005) | |
| 571-724, gnl|canFam2|chr23 (28866711-28866516) | |
| 571-724, gnl|danRer3|chr9 (24989739-24989916) | |
| 571-724, gnl|dasNov1|scaffold_162321 (4069-3878) | |
| 571-724, gnl|echTel1|scaffold_292998 (7942-7744) | |
| 571-724, gnl|fr1|chrUn (96624734-96624903) | |
| 571-724, gnl|galGal2|chr2 (33766485-33766684) | |
| 571-724, gnl|hg17|chr3 (17106189-17106387) | |
| 571-724, gnl|Hg17|chr3 (17106227-17106379) | |
| 571-724, gnl|loxAfr1|scaffold_10628 (13839-13641) | |
| 571-724, gnl|mm7|chr17 (48835631-48835828) | |
| 571-724, gnl|Mm7|chr17 (48835668-48835818) | |
| 571-724, gnl|monDom2|scaffold_7 (72638932-72639123) | |
| 571-724, gnl|oryCun1|scaffold_197162 (5609-5423) | |
| 571-724, gnl|panTro1|chr2 (17796135-17796333) | |
| 571-724, gnl|rheMac2|chr2 (159391684-159391882) | |
| 571-724, gnl|rn3|chr9 (4688116-4687920) | |
| 571-724, gnl|tetNig1|chrUn_random (32064532-32064364) | |
| 571-724, gnl|xenTro1|scaffold_543 (735578-735387) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr1 (27193266-27193447) | |
| 1-182, gnl|canFam2|chr23 (28935276-28934219) | |
| 1-182, gnl|danRer3|chr6 (16813782-16812725) | |
| 1-182, gnl|dasNov1|scaffold_20579 (45171-44128) | |
| 1-182, gnl|echTel1|scaffold_295459 (13012-14072) | |
| 1-182, gnl|fr1|chrUn (96616870-96617927) | |
| 1-182, gnl|galGal2|chr2 (33728378-33729435) | |
| 1-182, gnl|hg17|chr3 (17027602-17028659) | |
| 1-182, gnl|Hg17|chr3 (17028475-17028656) | |
| 1-182, gnl|loxAfr1|scaffold_752 (135887-136945) | |
| 1-182, gnl|mm7|chr17 (48755685-48756742) | |
| 1-182, gnl|Mm7|chr17 (48756558-48756739) | |
| 1-182, gnl|monDom2|scaffold_7 (72554509-72555566) | |
| 1-182, gnl|oryCun1|scaffold_190060 (13499-14542) | |
| 1-182, gnl|panTro1|chr2 (17719933-17720990) | |
| 1-182, gnl|rheMac2|chr2 (159313419-159314476) | |
| 1-182, gnl|rn3|chr9 (4768016-4766959) | |
| 1-182, gnl|tetNig1|chrUn_random (32073171-32072114) | |
| 1-182, gnl|xenTro1|scaffold_543 (791473-790416) | |
| 571-724, gnl|bosTau2|chr1 (27313852-27314005) | |
| 571-724, gnl|canFam2|chr23 (28866711-28866516) | |
| 571-724, gnl|danRer3|chr9 (24989739-24989916) | |
| 571-724, gnl|dasNov1|scaffold_162321 (4069-3878) | |
| 571-724, gnl|echTel1|scaffold_292998 (7942-7744) | |
| 571-724, gnl|fr1|chrUn (96624734-96624903) | |
| 571-724, gnl|galGal2|chr2 (33766485-33766684) | |
| 571-724, gnl|hg17|chr3 (17106189-17106387) | |
| 571-724, gnl|Hg17|chr3 (17106227-17106379) | |
| 571-724, gnl|loxAfr1|scaffold_10628 (13839-13641) | |
| 571-724, gnl|mm7|chr17 (48835631-48835828) | |
| 571-724, gnl|Mm7|chr17 (48835668-48835818) | |
| 571-724, gnl|monDom2|scaffold_7 (72638932-72639123) | |
| 571-724, gnl|oryCun1|scaffold_197162 (5609-5423) | |
| 571-724, gnl|panTro1|chr2 (17796135-17796333) | |
| 571-724, gnl|rheMac2|chr2 (159391684-159391882) | |
| 571-724, gnl|rn3|chr9 (4688116-4687920) | |
| 571-724, gnl|tetNig1|chrUn_random (32064532-32064364) | |
| 571-724, gnl|xenTro1|scaffold_543 (735578-735387) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| hea (0.408998) | |
| ste (0.270416) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cje (0.165235) | |
| isp (0.150376) | |
| sug (0.127291) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| ste (0.270416) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cje (0.165235) | |
| isp (0.150376) | |
| sug (0.127291) | |
| spc (0.113366) | |
| ldo (0.0970026) |