Non-Coding RNA Search

Ss1.1-rsug18_b9.5

Sequence:


               
               GCCGCCCAGAAGTGATTTACAACTATGTCCAAAGACCCTTTATTCGAATGTCTTGGGAGA
AGGAAGAAGGAAAGAGTCGGCATGTAGACTTTCAGTGTGTAAAGAGTAAATCCATCACCA
ACCTTGCAGCAGCTGCCGCAGACATTCCCCAGGACCAGCTGGTAGTCATGCACCCAACTC
CCCAGGTGGATGAGCTGGATATTCTCCCTATCCATCCCCCTTCTGGCAGCAATGACCTCG
ATCCTGATGCGCAGAATCCAGTGCTGTGATGCTGATGTTCCTTGAAACCATAGCATGCTA
CTCTTCACAGTGACGTTGCACTCTCCTCATTCTGCACTGCAAGGCCACTCTCTTCATTGT
GAGATGCACATAACGATGTTTAGGATATTGCAGTGTAGGCTTTTTTAAAAGACCAAAGGT
AGCCGATTGGTTTTTTAACTGAGTACAACTCTAGCATCCTGAGGTTCCAGTTACATAAAC
GTATTTGTTTACTAGTGGGTTTGTGGAATTGGTTCTTTGTATGGGGGACAGTCCTTTTTC
ACACATCTAGATCTTTTCTGAAGTGGTGGAAATTGGCAGCTGGGGTACTTTCAGTCTAGA
TTGATAGTTACCACACCCCAGGTAAAATGTAGAATATTACATGGTTGCACTTTATAAATG
GTGGTTAAATGGAACTGTTCAAGCCATTTTTCTAGTTGTGATGCACAATATAATTTAAAT
AAGTGCTTCTTTCAAAGTATTCTTTCAGTAAATTGTGTATAGTTTGCTGCCCACGATGAG
CAAAATGTGTTTGTCCTTGGGCTTATTTGAATGATTAAAATGAGATTCAGTGCCCATATC
TTATCAGTTATCTCCAGTGCCGTTTTCACCCTTTTAGAGTGAGTCATAATGCAAGGAGTG
TGAACATCAGAAGTGGTTTATTATCCAGTCTGCCTTACCCTTAATCTGTTCACAGATATT
TATTTACTAATGATTTTTTTTCCCCAAGAGTTATGGGATAGGAAAATGGCGTGTCTGCTC
TTCATTTACTAAATGATTGTAAACTGGTTTTTTCATCAAAATAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCCAGAAGTGATTTACAACTATGTCCAAAGACCCTTTATTCGAATGTCTTGGGAGA
AGGAAGAAGGAAAGAGTCGGCATGTAGACTTTCAGTGTGTAAAGAGTAAATCCATCACCA
ACCTTGCAGCAGCTGCCGCAGACATTCCCCAGGACCAGCTGGTAGTCATGCACCCAACTC
CCCAGGTGGATGAGCTGGATATTCTCCCTATCCATCCCCCTTCTGGCAGCAATGACCTCG
ATCCTGATGCGCAGAATCCAGTGCTGTGATGCTGATGTTCCTTGAAACCATAGCATGCTA
CTCTTCACAGTGACGTTGCACTCTCCTCATTCTGCACTGCAAGGCCACTCTCTTCATTGT
GAGATGCACATAACGATGTTTAGGATATTGCAGTGTAGGCTTTTTTAAAAGACCAAAGGT
AGCCGATTGGTTTTTTAACTGAGTACAACTCTAGCATCCTGAGGTTCCAGTTACATAAAC
GTATTTGTTTACTAGTGGGTTTGTGGAATTGGTTCTTTGTATGGGGGACAGTCCTTTTTC
ACACATCTAGATCTTTTCTGAAGTGGTGGAAATTGGCAGCTGGGGTACTTTCAGTCTAGA
TTGATAGTTACCACACCCCAGGTAAAATGTAGAATATTACATGGTTGCACTTTATAAATG
GTGGTTAAATGGAACTGTTCAAGCCATTTTTCTAGTTGTGATGCACAATATAATTTAAAT
AAGTGCTTCTTTCAAAGTATTCTTTCAGTAAATTGTGTATAGTTTGCTGCCCACGATGAG
CAAAATGTGTTTGTCCTTGGGCTTATTTGAATGATTAAAATGAGATTCAGTGCCCATATC
TTATCAGTTATCTCCAGTGCCGTTTTCACCCTTTTAGAGTGAGTCATAATGCAAGGAGTG
TGAACATCAGAAGTGGTTTATTATCCAGTCTGCCTTACCCTTAATCTGTTCACAGATATT
TATTTACTAATGATTTTTTTTCCCCAAGAGTTATGGGATAGGAAAATGGCGTGTCTGCTC
TTCATTTACTAAATGATTGTAAACTGGTTTTTTCATCAAAATAAAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12805363|gb|AAH02151.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805363|gb|AAH02151.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-279, - strand, RNAz p=0.8459
               

               
               320-436, + strand, RNAz p=0.940616

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.8459
               

               
               320-436, + strand, RNAz p=0.940616

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032320, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032320, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1068, gnl|bosTau2|chr15 (23340267-23341320)
               

               
               1-1068, gnl|Hg17|chr11 (13367222-13366157)
               

               
               1-1068, gnl|Mm7|chr7 (109232722-109231681)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr15 (23340267-23341320)
               

               
               1-1068, gnl|Hg17|chr11 (13367222-13366157)
               

               
               1-1068, gnl|Mm7|chr7 (109232722-109231681)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	160-279, - strand, RNAz p=0.8459
	320-436, + strand, RNAz p=0.940616

	1-1068, gnl\|bosTau2\|chr15 (23340267-23341320)
	1-1068, gnl\|Hg17\|chr11 (13367222-13366157)
	1-1068, gnl\|Mm7\|chr7 (109232722-109231681)

	vin (0.332557)
	fco (0.314416)
	ret (0.257467)
	tra (0.246184)
	gul (0.177588)
	mcp (0.170648)
	tbr (0.154178)
	hyp (0.142837)
	ste (0.135208)
	sug (0.127291)
	ebs (0.118301)
	cbl (0.114797)