Non-Coding RNA Search

Ss1.1-rsug18_j17.5

Sequence:


               
               CAACTATTGAATAGGGACACACTGAAGCCTTAAGAAGTTATAGATTTGTGCTGCTGCCAG
TTATGTTAATTATTAAGATTATTATTAGAAAACAAATGTCTCTGGCGTGAGAAGGAAGAG
GCTTAATTATTAAGCTTGTAGGCTATTTTCATATACTCTGTGAAATGTGTCCAGATGTGA
CACCAGGTTTGTATATGAAAATATACTGTCTCCCCTCTCACTTTTTTTTCTTTGAAAGTG
ATATATACAGTAATACATGCTTTTTCACCTTTCTCTTCTCCTGACATCTGCCTTCCCCCA
GTGAGGTTTGCTTTGCAACCGAAAAGGTAACAAGTACCAGGTATGGCAAGTTGTGAAGAC
AGTTCATCTTCCAGGAGACCGAATTCAGCAGTGTTCCCATCACTGTCGAATGCGAACATT
CATCTCTCTGAATCATTTGTTCAAACAATAGCATCCCACTTCTTCCTGCTGTATCACATG
AAGTGATTTGCATTTTTTTTTCAGTCCACCTGACATATGTGCACAGAACTGTATCCACTA
TCAAGAAAATAGAACTGTCAGAAACTGCCAATTATTACCGCACCATTTAAGACTTACATA
CTCAGAATAAATAAAATAGTTCCACCTGGAATAACTGGATTACGGATAAGCAGAGCGAAA
GCCAAATCACTTCATGCCTGCGGTAGCCTTCTGACTGAAATGTGAAACATTGTAGCTGGC
TTTAGCTATTGTCGTATTAGCAGTATAAACACACATAAGAGTATGATCCAGTAATTGTCG
AGAATGTGTCCAACTGAAATAGAGGGATTTTTTTTTTTTAAACTCATAAATAAGTCAGTA
GGAAGCATTATTCTTCTGGGTATGACACAGTCCTACGAACAAGCTTTTGTTTGTGTACTT
ATTTAAATAACCAGAGCGCATTTATTAAAGTGCTATGGAGAGGACTATTCCCAGAGATTT
TAAGGCGCAAACCATATTGCAGCAAGAGATGAGCCCCCGTGCTGTAAATAAGAGGAAGGA
AGTGAGAGAGAAATGTTCAATATTTTATGAGTTTAGAGTGTAGTAAATAAAAGGTGATGT
AAATGAATGTTGCACAAACTGTGTTCATGATACTTTGAGTAGGACCTTAGGAAAAATTGC
ACATTCTCAGAAGCTCTTGATGTCACTCTAATTAGGAGGGAAAAATGCTGCTAATGAGAA
CAGTCGCAAATTTCTAGCATATAATTACAAGAGCAGCCTGTGGATATGATCACTGAAGTA
ACTTTGTGGTGATTTGTGCCATTGCTTTTTTATTTAAAATTTTTTTATAATTAAATGCAT
TAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTATTGAATAGGGACACACTGAAGCCTTAAGAAGTTATAGATTTGTGCTGCTGCCAG
TTATGTTAATTATTAAGATTATTATTAGAAAACAAATGTCTCTGGCGTGAGAAGGAAGAG
GCTTAATTATTAAGCTTGTAGGCTATTTTCATATACTCTGTGAAATGTGTCCAGATGTGA
CACCAGGTTTGTATATGAAAATATACTGTCTCCCCTCTCACTTTTTTTTCTTTGAAAGTG
ATATATACAGTAATACATGCTTTTTCACCTTTCTCTTCTCCTGACATCTGCCTTCCCCCA
GTGAGGTTTGCTTTGCAACCGAAAAGGTAACAAGTACCAGGTATGGCAAGTTGTGAAGAC
AGTTCATCTTCCAGGAGACCGAATTCAGCAGTGTTCCCATCACTGTCGAATGCGAACATT
CATCTCTCTGAATCATTTGTTCAAACAATAGCATCCCACTTCTTCCTGCTGTATCACATG
AAGTGATTTGCATTTTTTTTTCAGTCCACCTGACATATGTGCACAGAACTGTATCCACTA
TCAAGAAAATAGAACTGTCAGAAACTGCCAATTATTACCGCACCATTTAAGACTTACATA
CTCAGAATAAATAAAATAGTTCCACCTGGAATAACTGGATTACGGATAAGCAGAGCGAAA
GCCAAATCACTTCATGCCTGCGGTAGCCTTCTGACTGAAATGTGAAACATTGTAGCTGGC
TTTAGCTATTGTCGTATTAGCAGTATAAACACACATAAGAGTATGATCCAGTAATTGTCG
AGAATGTGTCCAACTGAAATAGAGGGATTTTTTTTTTTTAAACTCATAAATAAGTCAGTA
GGAAGCATTATTCTTCTGGGTATGACACAGTCCTACGAACAAGCTTTTGTTTGTGTACTT
ATTTAAATAACCAGAGCGCATTTATTAAAGTGCTATGGAGAGGACTATTCCCAGAGATTT
TAAGGCGCAAACCATATTGCAGCAAGAGATGAGCCCCCGTGCTGTAAATAAGAGGAAGGA
AGTGAGAGAGAAATGTTCAATATTTTATGAGTTTAGAGTGTAGTAAATAAAAGGTGATGT
AAATGAATGTTGCACAAACTGTGTTCATGATACTTTGAGTAGGACCTTAGGAAAAATTGC
ACATTCTCAGAAGCTCTTGATGTCACTCTAATTAGGAGGGAAAAATGCTGCTAATGAGAA
CAGTCGCAAATTTCTAGCATATAATTACAAGAGCAGCCTGTGGATATGATCACTGAAGTA
ACTTTGTGGTGATTTGTGCCATTGCTTTTTTATTTAAAATTTTTTTATAATTAAATGCAT
TAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               7-752, gnl|bosTau2|chr9 (38045535-38044801)
               

               
               7-752, gnl|Hg17|chr6 (129941238-129940508)
               

               
               7-752, gnl|Mm7|chr10 (26669375-26670166)
               


               
               1072-1336, gnl|bosTau2|chr10 (11596006-11596271)
               

               
               1072-1336, gnl|Hg17|chr6 (129940163-129939933)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-752, gnl|bosTau2|chr9 (38045535-38044801)
               

               
               7-752, gnl|Hg17|chr6 (129941238-129940508)
               

               
               7-752, gnl|Mm7|chr10 (26669375-26670166)
               


               
               1072-1336, gnl|bosTau2|chr10 (11596006-11596271)
               

               
               1072-1336, gnl|Hg17|chr6 (129940163-129939933)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               mgm (1.08206)
               

               
               mgp (0.922722)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (1.08206)
               

               
               mgp (0.922722)
               

               
               fat (0.58971)
               

               
               lin (0.582411)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	7-752, gnl\|bosTau2\|chr9 (38045535-38044801)
	7-752, gnl\|Hg17\|chr6 (129941238-129940508)
	7-752, gnl\|Mm7\|chr10 (26669375-26670166)

	1072-1336, gnl\|bosTau2\|chr10 (11596006-11596271)
	1072-1336, gnl\|Hg17\|chr6 (129940163-129939933)

	mgm (1.08206)
	mgp (0.922722)
	fat (0.58971)
	lin (0.582411)
	lyg (0.532411)
	cbe (0.478469)
	sme (0.305437)
	liv (0.292569)
	kid (0.259471)
	sug (0.254582)
	tes (0.207814)
	sag (0.182715)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	ova (0.129132)
	tra (0.123092)
	cty (0.10408)