Non-Coding RNA Search

Ss1.1-rsug18_k18.5

Sequence:


               
               TCCATTTGTAAATGTCCCACAATTTATGAGCAAAAGTTTAAGAACCATTGTCTCATGTAC
CAGGAATTCTGTGTTCTGTGAAAACATACTCATTCCAAACCTGTTAAGTTTTTCCAAACA
TCCAGAGAATGGCTTTGCTGTTGGAGGTGCTTATGATGGCGTCTGTCTCTCTGCCTCTGT
CTTCTCTCACCACCCTGGACAGTGACACAATTTTAAACCACCCACCAGAATTTTTTTCAA
GTTTAACCATTTCACGATTTCTCGGTTTTTGTGAATTTATTACTTCTCTTACTGAACTGC
TGCAAATAGGTTGAAGACTTCTAACATCGGCCCTCCTCTCCCAGAACGAAGGCTGCACTT
CGCCTTGGGAATTTACCATGATATTTGTAGTATTGGCTTGAGACCGTGCCACAGCAACTC
AGAGGGTTAGCGTGCAAGTCTTAACCACATCACAGTGTGTCGCTGGTGACGTTCAGATGG
ACTTGATTACAGGCTGATGGGTAGACTCACCTCTGGTCTGGTACAGAAACGGAGAGGGTT
TTCCTTCGGTGTCCATGTTTTGTTGTGTTCTGGGTGTGAAGAGAATTTGATATATTTTTT
TTAACTATGGGGTTTATTTTTCTAAATATGGGTTAGTTGATCAGTGAATTGATTGGGGAT
GCCCTTAAAAGAAAATTGAAGTTTTCCCAGTGTGAACCTTAAAATATCAGAGAAGGCAGT
TCGCTTATTCAATTCTCTGTTGGGAGAACAAAACTTCTCTCCAGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATTTGTAAATGTCCCACAATTTATGAGCAAAAGTTTAAGAACCATTGTCTCATGTAC
CAGGAATTCTGTGTTCTGTGAAAACATACTCATTCCAAACCTGTTAAGTTTTTCCAAACA
TCCAGAGAATGGCTTTGCTGTTGGAGGTGCTTATGATGGCGTCTGTCTCTCTGCCTCTGT
CTTCTCTCACCACCCTGGACAGTGACACAATTTTAAACCACCCACCAGAATTTTTTTCAA
GTTTAACCATTTCACGATTTCTCGGTTTTTGTGAATTTATTACTTCTCTTACTGAACTGC
TGCAAATAGGTTGAAGACTTCTAACATCGGCCCTCCTCTCCCAGAACGAAGGCTGCACTT
CGCCTTGGGAATTTACCATGATATTTGTAGTATTGGCTTGAGACCGTGCCACAGCAACTC
AGAGGGTTAGCGTGCAAGTCTTAACCACATCACAGTGTGTCGCTGGTGACGTTCAGATGG
ACTTGATTACAGGCTGATGGGTAGACTCACCTCTGGTCTGGTACAGAAACGGAGAGGGTT
TTCCTTCGGTGTCCATGTTTTGTTGTGTTCTGGGTGTGAAGAGAATTTGATATATTTTTT
TTAACTATGGGGTTTATTTTTCTAAATATGGGTTAGTTGATCAGTGAATTGATTGGGGAT
GCCCTTAAAAGAAAATTGAAGTTTTCCCAGTGTGAACCTTAAAATATCAGAGAAGGCAGT
TCGCTTATTCAATTCTCTGTTGGGAGAACAAAACTTCTCTCCAGTGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               644-762, - strand, RNAz p=0.571835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               644-762, - strand, RNAz p=0.571835

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-253, gnl|bosTau2|chr19 (16020150-16020425)
               

               
               1-253, gnl|Hg17|chr17 (25875911-25876164)
               

               
               1-253, gnl|Mm7|chr11 (76810802-76810579)
               


               
               439-762, gnl|bosTau2|chr16 (38625761-38625442)
               

               
               439-762, gnl|Hg17|chr17 (25876325-25876637)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr19 (16020150-16020425)
               

               
               1-253, gnl|Hg17|chr17 (25875911-25876164)
               

               
               1-253, gnl|Mm7|chr11 (76810802-76810579)
               


               
               439-762, gnl|bosTau2|chr16 (38625761-38625442)
               

               
               439-762, gnl|Hg17|chr17 (25876325-25876637)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	1-253, gnl\|bosTau2\|chr19 (16020150-16020425)
	1-253, gnl\|Hg17\|chr17 (25875911-25876164)
	1-253, gnl\|Mm7\|chr11 (76810802-76810579)

	439-762, gnl\|bosTau2\|chr16 (38625761-38625442)
	439-762, gnl\|Hg17\|chr17 (25876325-25876637)

	rec (0.17307)
	eye (0.170503)
	ski (0.146735)
	spl (0.143184)
	lyg (0.133103)
	sug (0.127291)