Non-Coding RNA Search

Ss1.1-rsug19_h13.5

Sequence:


               
               GAAAGAGCTCCGACATCTGGCAATACTTAATTTTCCTAAATATTGCGAACCTGTGGTTAA
AGGAGAAGCAAGTGAACGTGATACACGGAAACTCTGGAGAAATATTGAACCTCATTTGAA
GAAAGCCATGCAGACTGTTTATCTCAGGGAAATATCAAGTTCACAGTGGGAAAAGCTACA
GAAAGATGACATAGATCCAGGACAACTGAAAGGTCTCTCGGCATGTACTCATGTGGAACT
TCCATATTACTCTAAGTTTATTCTAATTGCTGCATACCTCGCTTCTTACAATCCAGCAAG
AACTGACAAGAGGTTTTTCCTTAAGCATCATGGGAAAATCAAGAAAACCAACTTTCTAAA
GAAACATGAAAAGACAAGCAATCATCTCCTCGGACCAAAACCGTTTCCACTAGACAGATT
ATTAGCAATATTATATAGTATTGTGGACAGCAGAGTTGCTCCAACAGCCAATATCTTTTC
CCAGATTACCTCTTTAGTGACCCTTCAGCTGTTAACCCTGGTTGGCCATGATGATCAACT
TGATGGACCAAAATACAAATGCACAGTATCTCTAGACTTCATCAGAGCTGTTGCTAGGAC
GGTGAACTTTGACATAATAAAATACTTGTATGATTTCTTGTGAAAACAAGCTTCAAAGCC
ATATGGACACTGTGACAGTGACTGAGCCAAGCTGTGTTCATCCAGCAACTCAGCTGGCCA
GGGAGAGGAGTTCTTTGGCTCTATTGGATTTGTCCAGACAGGTGCTGGCCCAGCATGGAA
TCTGATGAAAATACTCTGATTGGTCTGGGTGAATGTGAGCAGAAGACTATTTACCAGGGA
CCCTGGAGTATTTGGAAGGAACGTGTTAATTATAAACAGCAGGGTTTGAGCACAATCTGT
TCTACTCTTAATGATGTTATCTTAACACTGAAATTGCCTGAAACCCATTTACTTAGGACT
ACATTTTGCTCTGTGAACTATCCCCTGCGCTTTGAACGTGCCAGCAGCCCTTGTATATAA
GCCCAGTCTTTTCACTTCCTCTCCATAGGAGCCTCTGCAGTCGCTTGCCAAAGCAGATTT
TCCTAAGGCCACGGCTTTAAAAGATCATAGTTGCAAAATATAATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGCTCCGACATCTGGCAATACTTAATTTTCCTAAATATTGCGAACCTGTGGTTAA
AGGAGAAGCAAGTGAACGTGATACACGGAAACTCTGGAGAAATATTGAACCTCATTTGAA
GAAAGCCATGCAGACTGTTTATCTCAGGGAAATATCAAGTTCACAGTGGGAAAAGCTACA
GAAAGATGACATAGATCCAGGACAACTGAAAGGTCTCTCGGCATGTACTCATGTGGAACT
TCCATATTACTCTAAGTTTATTCTAATTGCTGCATACCTCGCTTCTTACAATCCAGCAAG
AACTGACAAGAGGTTTTTCCTTAAGCATCATGGGAAAATCAAGAAAACCAACTTTCTAAA
GAAACATGAAAAGACAAGCAATCATCTCCTCGGACCAAAACCGTTTCCACTAGACAGATT
ATTAGCAATATTATATAGTATTGTGGACAGCAGAGTTGCTCCAACAGCCAATATCTTTTC
CCAGATTACCTCTTTAGTGACCCTTCAGCTGTTAACCCTGGTTGGCCATGATGATCAACT
TGATGGACCAAAATACAAATGCACAGTATCTCTAGACTTCATCAGAGCTGTTGCTAGGAC
GGTGAACTTTGACATAATAAAATACTTGTATGATTTCTTGTGAAAACAAGCTTCAAAGCC
ATATGGACACTGTGACAGTGACTGAGCCAAGCTGTGTTCATCCAGCAACTCAGCTGGCCA
GGGAGAGGAGTTCTTTGGCTCTATTGGATTTGTCCAGACAGGTGCTGGCCCAGCATGGAA
TCTGATGAAAATACTCTGATTGGTCTGGGTGAATGTGAGCAGAAGACTATTTACCAGGGA
CCCTGGAGTATTTGGAAGGAACGTGTTAATTATAAACAGCAGGGTTTGAGCACAATCTGT
TCTACTCTTAATGATGTTATCTTAACACTGAAATTGCCTGAAACCCATTTACTTAGGACT
ACATTTTGCTCTGTGAACTATCCCCTGCGCTTTGAACGTGCCAGCAGCCCTTGTATATAA
GCCCAGTCTTTTCACTTCCTCTCCATAGGAGCCTCTGCAGTCGCTTGCCAAAGCAGATTT
TCCTAAGGCCACGGCTTTAAAAGATCATAGTTGCAAAATATAATAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8NDU9_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8NDU9_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               589-1126, gnl|bosTau2|chr4 (22461992-22462529)
               

               
               589-1126, gnl|Hg17|chr7 (103361300-103360763)
               

               
               589-1126, gnl|Mm7|chr5 (21525403-21524871)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               589-1126, gnl|bosTau2|chr4 (22461992-22462529)
               

               
               589-1126, gnl|Hg17|chr7 (103361300-103360763)
               

               
               589-1126, gnl|Mm7|chr5 (21525403-21524871)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	589-1126, gnl\|bosTau2\|chr4 (22461992-22462529)
	589-1126, gnl\|Hg17\|chr7 (103361300-103360763)
	589-1126, gnl\|Mm7\|chr5 (21525403-21524871)

	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)
	pgl (0.118483)