Ss1.1-rsug20_b18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGACGTATGTCTCCGTCACTGCTAACTGTAATCTCCCACCCTCAGCATTTCTGGTTG TTACAGACCTACAGAGTCAGATTCAGAAAAGAGCTCAAAACCAAAACAGAGAGGAAATCT TGGCCAAGCATTTAAACGGGTCTCTGGAGATTTTACATATATGTGCATGTATACCTATAT GGCATGTGTATGTATATGCATATACATATAGGTATGTATACACACATATAGATACGTATG TATTTAAATGAACAATAGTCAAGTACAAGATAACATTCTGTTCTCTTACTGCATCCCATT TTCTGCACCTCAGTGGGTTATGCCTTAGATTACAATGAATACTTCAGAGATCTGAATCAC ATATGTGTGATCAATGAACACGGCAAAGAAAAGTATCGAGTCTAAAGAAGTAAATTTTCG CCATCGAATCGGCAGATAACATTCCTACTTAACGACTACACTCAGGAAGCCAGCATGTAA AGTTTGTCTCCCAGGCATCTTCACTCAGCAGGATTTAAAAGAACAAAAAAATTTAATGAG CAGGCTTTATTTTCTGAGATTATAACTATAACGTAAAGAGTCCCAAAGGTTCTTCAGGAA AAGAAAGCAATGCTTTTATTTGCCTTGTTTCAAATTAAACACTCCACCTTGTGACTCATA AGTTCCATCTACCTTCACACCCCTGAGATATACTTTCTTTTGTTTTGATAAAGTCATTAT GGGTGATTACTATACCCCCACCTACTAACTCAAATAGTTTTCACTTAACTATTTTTTTTA AATACTCTACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGACGTATGTCTCCGTCACTGCTAACTGTAATCTCCCACCCTCAGCATTTCTGGTTG TTACAGACCTACAGAGTCAGATTCAGAAAAGAGCTCAAAACCAAAACAGAGAGGAAATCT TGGCCAAGCATTTAAACGGGTCTCTGGAGATTTTACATATATGTGCATGTATACCTATAT GGCATGTGTATGTATATGCATATACATATAGGTATGTATACACACATATAGATACGTATG TATTTAAATGAACAATAGTCAAGTACAAGATAACATTCTGTTCTCTTACTGCATCCCATT TTCTGCACCTCAGTGGGTTATGCCTTAGATTACAATGAATACTTCAGAGATCTGAATCAC ATATGTGTGATCAATGAACACGGCAAAGAAAAGTATCGAGTCTAAAGAAGTAAATTTTCG CCATCGAATCGGCAGATAACATTCCTACTTAACGACTACACTCAGGAAGCCAGCATGTAA AGTTTGTCTCCCAGGCATCTTCACTCAGCAGGATTTAAAAGAACAAAAAAATTTAATGAG CAGGCTTTATTTTCTGAGATTATAACTATAACGTAAAGAGTCCCAAAGGTTCTTCAGGAA AAGAAAGCAATGCTTTTATTTGCCTTGTTTCAAATTAAACACTCCACCTTGTGACTCATA AGTTCCATCTACCTTCACACCCCTGAGATATACTTTCTTTTGTTTTGATAAAGTCATTAT GGGTGATTACTATACCCCCACCTACTAACTCAAATAGTTTTCACTTAACTATTTTTTTTA AATACTCTACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 142-252, - strand, RNAz p=0.811338 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 142-252, - strand, RNAz p=0.811338 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 20-252, gnl|bosTau2|chr13 (13978104-13977876) | |
| 20-252, gnl|canFam2|chr2 (11533302-11533107) | |
| 20-252, gnl|dasNov1|scaffold_7976 (55124-54911) | |
| 20-252, gnl|echTel1|scaffold_299028 (85212-84996) | |
| 20-252, gnl|hg17|chr10 (25178942-25179158) | |
| 20-252, gnl|loxAfr1|scaffold_1175 (89859-90082) | |
| 20-252, gnl|mm7|chr2 (21110231-21110433) | |
| 20-252, gnl|oryCun1|scaffold_205129 (62219-62027) | |
| 20-252, gnl|panTro1|chr8 (25450472-25450689) | |
| 20-252, gnl|rheMac2|chr9 (25030767-25030982) | |
| 20-252, gnl|rn3|chr17 (95033060-95033262) | |
| 286-779, gnl|bosTau2|chr13 (13976992-13976496) | |
| 286-779, gnl|canFam2|chr2 (11534433-11533478) | |
| 286-779, gnl|dasNov1|scaffold_7976 (56170-55278) | |
| 286-779, gnl|echTel1|scaffold_299028 (86506-85529) | |
| 286-779, gnl|galGal2|chr2 (16121084-16120092) | |
| 286-779, gnl|hg17|chr10 (25177791-25178767) | |
| 286-779, gnl|Hg17|chr10 (25178898-25178405) | |
| 286-779, gnl|loxAfr1|scaffold_1175 (88625-89625) | |
| 286-779, gnl|mm7|chr2 (21109004-21109953) | |
| 286-779, gnl|Mm7|chr2 (21110051-21109611) | |
| 286-779, gnl|monDom2|scaffold_7 (43716317-43715248) | |
| 286-779, gnl|oryCun1|scaffold_205129 (63276-62471) | |
| 286-779, gnl|panTro1|chr8 (25449323-25450297) | |
| 286-779, gnl|rheMac2|chr9 (25029616-25030592) | |
| 286-779, gnl|rn3|chr17 (95031870-95032781) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-252, gnl|bosTau2|chr13 (13978104-13977876) | |
| 20-252, gnl|canFam2|chr2 (11533302-11533107) | |
| 20-252, gnl|dasNov1|scaffold_7976 (55124-54911) | |
| 20-252, gnl|echTel1|scaffold_299028 (85212-84996) | |
| 20-252, gnl|hg17|chr10 (25178942-25179158) | |
| 20-252, gnl|loxAfr1|scaffold_1175 (89859-90082) | |
| 20-252, gnl|mm7|chr2 (21110231-21110433) | |
| 20-252, gnl|oryCun1|scaffold_205129 (62219-62027) | |
| 20-252, gnl|panTro1|chr8 (25450472-25450689) | |
| 20-252, gnl|rheMac2|chr9 (25030767-25030982) | |
| 20-252, gnl|rn3|chr17 (95033060-95033262) | |
| 286-779, gnl|bosTau2|chr13 (13976992-13976496) | |
| 286-779, gnl|canFam2|chr2 (11534433-11533478) | |
| 286-779, gnl|dasNov1|scaffold_7976 (56170-55278) | |
| 286-779, gnl|echTel1|scaffold_299028 (86506-85529) | |
| 286-779, gnl|galGal2|chr2 (16121084-16120092) | |
| 286-779, gnl|hg17|chr10 (25177791-25178767) | |
| 286-779, gnl|Hg17|chr10 (25178898-25178405) | |
| 286-779, gnl|loxAfr1|scaffold_1175 (88625-89625) | |
| 286-779, gnl|mm7|chr2 (21109004-21109953) | |
| 286-779, gnl|Mm7|chr2 (21110051-21109611) | |
| 286-779, gnl|monDom2|scaffold_7 (43716317-43715248) | |
| 286-779, gnl|oryCun1|scaffold_205129 (63276-62471) | |
| 286-779, gnl|panTro1|chr8 (25449323-25450297) | |
| 286-779, gnl|rheMac2|chr9 (25029616-25030592) | |
| 286-779, gnl|rn3|chr17 (95031870-95032781) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.147427) | |
| sug (0.127291) | |
| ese (0.126502) |