Non-Coding RNA Search

Ss1.1-rsug20_g22.5

Sequence:


               
               CGCGCGATGAAGTGCGTGTTTGTTACTGTAGGGACCACCAGCTTTGACGACCTGATTGCG
TGTGTATCGGCGCACGACAGTCTGCAAATAATCAAGAGCCTTGGTTACAACCGACTTGTC
CTACAAATAGGTAGAGGAAAGGTGGTACCTGAACCATTCAGTACTGAGTCATTTACTCTG
GATGTTTACAGGTACAAGGATTCATTGAAAGAAGACCTTCAGAAAGCAGATCTTGTTATT
AGCCACGCAGGTGCAGGAAGCTGTTTAGAGACGCTGGAAAAAAGAAAGCCACTTGTAGTG
GTTATAAATGAAAAGTTGATGAACAATCATCAGCTGGAATTGGCAAAGCAGCTACACAAA
GACGGGCATCTCTTCTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGAC
TTATCAACACTGAAATGTTTTCCTCCTGGCCAGCCAGAAAAATTTTCTGCATTTTTGGAT
AAAGTTGTTGGATTACAAAAATAAACACTAAACTCTCAACACTTTAAAAAACACCCCTCA
AATTCAACCTATGGAATGTGGTTAAATCAAATTAAATATATAGTATATATTTGCAGAATA
ATATAAATTAATAAGCCTATATCTATAGAATGTATAGAAAATTTTATAGTGTGAATGTTA
GCATTTGGGTCCAAATTCTAGCTGCAGTTTCATAAATTTATTAGACTTTTCCCTAATCTT
CTAGTAAAGGGAATATGTAGTGAGTAGTTACATGTTTTATCCTAGAATCCAAGATGGATT
TGGAATCATGAAAAAAATGAATTAAATATGAACACTTTGACAGAAACCTCAAGTATAGTT
AGTTTGATATTCCTTAGATTAAAAAAATGAAACAGAGGCCTGTCAAAAAAATTTTGAGTC
AGCATCTCTAGCTTCATAATCCAAGGAACAAAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCGATGAAGTGCGTGTTTGTTACTGTAGGGACCACCAGCTTTGACGACCTGATTGCG
TGTGTATCGGCGCACGACAGTCTGCAAATAATCAAGAGCCTTGGTTACAACCGACTTGTC
CTACAAATAGGTAGAGGAAAGGTGGTACCTGAACCATTCAGTACTGAGTCATTTACTCTG
GATGTTTACAGGTACAAGGATTCATTGAAAGAAGACCTTCAGAAAGCAGATCTTGTTATT
AGCCACGCAGGTGCAGGAAGCTGTTTAGAGACGCTGGAAAAAAGAAAGCCACTTGTAGTG
GTTATAAATGAAAAGTTGATGAACAATCATCAGCTGGAATTGGCAAAGCAGCTACACAAA
GACGGGCATCTCTTCTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGAC
TTATCAACACTGAAATGTTTTCCTCCTGGCCAGCCAGAAAAATTTTCTGCATTTTTGGAT
AAAGTTGTTGGATTACAAAAATAAACACTAAACTCTCAACACTTTAAAAAACACCCCTCA
AATTCAACCTATGGAATGTGGTTAAATCAAATTAAATATATAGTATATATTTGCAGAATA
ATATAAATTAATAAGCCTATATCTATAGAATGTATAGAAAATTTTATAGTGTGAATGTTA
GCATTTGGGTCCAAATTCTAGCTGCAGTTTCATAAATTTATTAGACTTTTCCCTAATCTT
CTAGTAAAGGGAATATGTAGTGAGTAGTTACATGTTTTATCCTAGAATCCAAGATGGATT
TGGAATCATGAAAAAAATGAATTAAATATGAACACTTTGACAGAAACCTCAAGTATAGTT
AGTTTGATATTCCTTAGATTAAAAAAATGAAACAGAGGCCTGTCAAAAAAATTTTGAGTC
AGCATCTCTAGCTTCATAATCCAAGGAACAAAATTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7671652|emb|CAB89277.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7671652|emb|CAB89277.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               85-252, gnl|bosTau2|chrX (18577887-18578054)
               

               
               85-252, gnl|Hg17|chrX (110731502-110731669)
               

               
               85-252, gnl|Mm7|chrX (138984216-138984383)
               


               
               371-924, gnl|bosTau2|chrX (18582041-18582599)
               

               
               371-924, gnl|Hg17|chrX (110737244-110737797)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-252, gnl|bosTau2|chrX (18577887-18578054)
               

               
               85-252, gnl|Hg17|chrX (110731502-110731669)
               

               
               85-252, gnl|Mm7|chrX (138984216-138984383)
               


               
               371-924, gnl|bosTau2|chrX (18582041-18582599)
               

               
               371-924, gnl|Hg17|chrX (110737244-110737797)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)

	85-252, gnl\|bosTau2\|chrX (18577887-18578054)
	85-252, gnl\|Hg17\|chrX (110731502-110731669)
	85-252, gnl\|Mm7\|chrX (138984216-138984383)

	371-924, gnl\|bosTau2\|chrX (18582041-18582599)
	371-924, gnl\|Hg17\|chrX (110737244-110737797)

	sug (0.254582)
	hea (0.204499)
	fty (0.17584)
	duo (0.172801)
	nco (0.161734)
	tbr (0.154178)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)