Ss1.1-rsug20_k18.5
|
TTTTTTTTCCTCTTAAGTTTTTGATGTCTTTTTTTAAACATACTTTCTGGGTTTTCTAAT
GGAGTATATAGTTTAGCCATTTCCACAGACTCTGACCTCCTCTCTTTAACACTTTTTTTT
TTTTTTTTTTGGATGGGGGAAAGGAGAGGTGCGGGGTTGGGGGGTGGGGGATCCAGCCTC
TCCGCACCCATTCACCCCACCTCTCTGGACCCTAGCCACCAACCTGAGTCCTGGACCTTC
CACCACCACCACCACCACCACACACAGTAGCCCACACGGATAGACAGTTGTCAGACAAGA
TTCCTTCAGATTCCGAGTTGCCTACCGGTTTGTTTGTTTAAACAGCAATAACCACAGCAC
ATATTACCATAGTTCCTTATAGTTTGACATACATACATACATACATACCATAGCGCTATT
CTCTCCTCTTTTTGTTTGTTTGTTTTCAACTTTTTTTTTTAAATAAATGCTCATAATCTT
TACTGGTGAAAAGGATGAAAAAAATAATAAACCAACAAACAAAACCTGTTTGTGGAAAAA
TAAATAAATGAAAAAAGGGGGATAAGAACTCACCTGAATGTGGAAGAGCTTGCCTCCCGT
TTAGGGTTTTGTACCTAAGGAAATAAAACACAAAACAAAACAAAAACACCCCCGGAGGAT
CTCACGTTTTATTAAAAAAGTGAAGATTGCTGTATACTATTTATTCAACTTATAATTTAT
GTTACTCCTTGATCTTTGTCTTTTGTCGTGACAAAGCATTTATTTAATAAAGTTATGCAT
TCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTCCTCTTAAGTTTTTGATGTCTTTTTTTAAACATACTTTCTGGGTTTTCTAAT
GGAGTATATAGTTTAGCCATTTCCACAGACTCTGACCTCCTCTCTTTAACACTTTTTTTT
TTTTTTTTTTGGATGGGGGAAAGGAGAGGTGCGGGGTTGGGGGGTGGGGGATCCAGCCTC
TCCGCACCCATTCACCCCACCTCTCTGGACCCTAGCCACCAACCTGAGTCCTGGACCTTC
CACCACCACCACCACCACCACACACAGTAGCCCACACGGATAGACAGTTGTCAGACAAGA
TTCCTTCAGATTCCGAGTTGCCTACCGGTTTGTTTGTTTAAACAGCAATAACCACAGCAC
ATATTACCATAGTTCCTTATAGTTTGACATACATACATACATACATACCATAGCGCTATT
CTCTCCTCTTTTTGTTTGTTTGTTTTCAACTTTTTTTTTTAAATAAATGCTCATAATCTT
TACTGGTGAAAAGGATGAAAAAAATAATAAACCAACAAACAAAACCTGTTTGTGGAAAAA
TAAATAAATGAAAAAAGGGGGATAAGAACTCACCTGAATGTGGAAGAGCTTGCCTCCCGT
TTAGGGTTTTGTACCTAAGGAAATAAAACACAAAACAAAACAAAAACACCCCCGGAGGAT
CTCACGTTTTATTAAAAAAGTGAAGATTGCTGTATACTATTTATTCAACTTATAATTTAT
GTTACTCCTTGATCTTTGTCTTTTGTCGTGACAAAGCATTTATTTAATAAAGTTATGCAT
TCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
pro (1.02407) |
|
sug (1.01833) |
|
fat (0.737137) |
|
rec (0.692281) |
|
eye (0.511509) |
|
mga (0.480615) |
|
csk (0.422238) |
|
elu (0.385356) |
|
bla (0.373042) |
|
pgl (0.35545) |
|
csp (0.322373) |
|
cga (0.279096) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ese (0.253004) |
|
tra (0.246184) |
|
eru (0.240096) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
pro (1.02407) |
|
sug (1.01833) |
|
fat (0.737137) |
|
rec (0.692281) |
|
eye (0.511509) |
|
mga (0.480615) |
|
csk (0.422238) |
|
elu (0.385356) |
|
bla (0.373042) |
|
pgl (0.35545) |
|
csp (0.322373) |
|
cga (0.279096) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ese (0.253004) |
|
tra (0.246184) |
|
eru (0.240096) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |