Non-Coding RNA Search

Ss1.1-rsug20_o14.5

Sequence:


               
               CAGTCGTGATGGATAAATCGAAAGGGGAGCCTGTCATTAGTGTGAAAACCACAAGCAGGT
CAAAAGAGAGAAGCTCTAAGAGTCAGGATCGCAAATCGGAAAGCAAAGAGAAGAGAGACA
TCTTGTCATTTGATAAAATCAAAGAGCAAAGGGAACGAGAACGCCAGAGGCAGCGGGAAC
GGGAAATCCGAGAGACAGAGAGGCGACGAGAGCGGGAGCAGCGGGAGCGGGAGCAGCGCC
TGGAGGCCTTCCACGAGCGGAAGGAGAAGGCGCGGCTGCAACGGGAGCGGCTCCAGCTCG
AGTGCCAGCGGCAGCGCCTTGAGCGCGAGCGCATGGAGCGGGAGCGGCTGGAACGGGAGC
GCATGCGTGTGGAGCGCGAGCGGAGGAAGGAGCAGGAGCGCATCCACCGCGAGCGTGAGG
AGCTGCGGCGCCAACAAGAACAGCTACGTTATGAGCAAGAGCGGAGGCCAGTACTCCGGA
GGCCCTACGACGACGTACGGCGAGATGACACCTATTGGCCTGAAGGAAAGCGTATGGCCA
TGGAGGACAGATACCGCCCGGACTTCCCTCGGCCTGACCACCGCTTCCACGACTTTGATC
ATCGTGACCGGGGCCAGTACCAGGATCACGTGGCTGACAGGAGGGAAGGTTCAAGGTCAG
TGATGGGAGAGCGAGATGGGCAGCACTATTCAGACGACCGCCACGGCCACGGAGGACCAC
CAGAGCGCCATGGCCGGGACTCCCGAGACGGCTGGGGGGGCTACGGCTCTGACAAGAGGA
TAAGTGAGGGCCGGGGGCCCCCGCCTCCACCCAGGGGTGGACGTGACTGGGTGGAACATA
ATCCAAGGCTCGAAGAGCATCAGGAGCGCACCTGGCCAGGCACAGTGGACGCAGGCACGG
CGGGCCGGGAGCACTTGCGGTGGCAAGGTGGTGAGAGGGGTCTTTCTGGGCCCTCGGGCC
CGGGGCACATGGCAAATCGGGGCGGAATGTCGGGGCGAGGCGGCTTTGCACACAGCGGGC
ATTCCCAGGGTCACATGGTGCCTGCCGGAGGCCTAGACGGTGGAGGACTGGCCGGCCAGG
ACCGGGGCAGCAGAGTCCCGCACCCCCACCCTCACCCTCACCCATACCCTCATTTCACCC
GCCGCTACTAGACCCACCCCACTCTGCGTGTCCTGGCTGTTGGACAGATGGACTGTTGAA
TCTCTTAGGGTTACCTTGAACTTGTGGGATATTTTAAGAAACAAAAGCAAATCCTGCCAC
CATGTTGTAGCTCAATACAATGTGAATTCACTTTTTTTTAAAAAAATAAATGTGTTCTGC
CATTTTTAAGACAAGGTTTCTGTTAACGAGGCATTCCATTTTCCATTAATAAAAGTTTAT
GGTTCGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCGTGATGGATAAATCGAAAGGGGAGCCTGTCATTAGTGTGAAAACCACAAGCAGGT
CAAAAGAGAGAAGCTCTAAGAGTCAGGATCGCAAATCGGAAAGCAAAGAGAAGAGAGACA
TCTTGTCATTTGATAAAATCAAAGAGCAAAGGGAACGAGAACGCCAGAGGCAGCGGGAAC
GGGAAATCCGAGAGACAGAGAGGCGACGAGAGCGGGAGCAGCGGGAGCGGGAGCAGCGCC
TGGAGGCCTTCCACGAGCGGAAGGAGAAGGCGCGGCTGCAACGGGAGCGGCTCCAGCTCG
AGTGCCAGCGGCAGCGCCTTGAGCGCGAGCGCATGGAGCGGGAGCGGCTGGAACGGGAGC
GCATGCGTGTGGAGCGCGAGCGGAGGAAGGAGCAGGAGCGCATCCACCGCGAGCGTGAGG
AGCTGCGGCGCCAACAAGAACAGCTACGTTATGAGCAAGAGCGGAGGCCAGTACTCCGGA
GGCCCTACGACGACGTACGGCGAGATGACACCTATTGGCCTGAAGGAAAGCGTATGGCCA
TGGAGGACAGATACCGCCCGGACTTCCCTCGGCCTGACCACCGCTTCCACGACTTTGATC
ATCGTGACCGGGGCCAGTACCAGGATCACGTGGCTGACAGGAGGGAAGGTTCAAGGTCAG
TGATGGGAGAGCGAGATGGGCAGCACTATTCAGACGACCGCCACGGCCACGGAGGACCAC
CAGAGCGCCATGGCCGGGACTCCCGAGACGGCTGGGGGGGCTACGGCTCTGACAAGAGGA
TAAGTGAGGGCCGGGGGCCCCCGCCTCCACCCAGGGGTGGACGTGACTGGGTGGAACATA
ATCCAAGGCTCGAAGAGCATCAGGAGCGCACCTGGCCAGGCACAGTGGACGCAGGCACGG
CGGGCCGGGAGCACTTGCGGTGGCAAGGTGGTGAGAGGGGTCTTTCTGGGCCCTCGGGCC
CGGGGCACATGGCAAATCGGGGCGGAATGTCGGGGCGAGGCGGCTTTGCACACAGCGGGC
ATTCCCAGGGTCACATGGTGCCTGCCGGAGGCCTAGACGGTGGAGGACTGGCCGGCCAGG
ACCGGGGCAGCAGAGTCCCGCACCCCCACCCTCACCCTCACCCATACCCTCATTTCACCC
GCCGCTACTAGACCCACCCCACTCTGCGTGTCCTGGCTGTTGGACAGATGGACTGTTGAA
TCTCTTAGGGTTACCTTGAACTTGTGGGATATTTTAAGAAACAAAAGCAAATCCTGCCAC
CATGTTGTAGCTCAATACAATGTGAATTCACTTTTTTTTAAAAAAATAAATGTGTTCTGC
CATTTTTAAGACAAGGTTTCTGTTAACGAGGCATTCCATTTTCCATTAATAAAAGTTTAT
GGTTCGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1229-1339, - strand, RNAz p=0.513324

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1229-1339, - strand, RNAz p=0.513324

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               208-491, gnl|bosTau2|chr9 (60016827-60017110)
               

               
               208-491, gnl|Hg17|chr19 (5545190-5544910)
               

               
               208-491, gnl|Mm7|chr17 (54776134-54775854)
               


               
               994-1388, gnl|bosTau2|chr9 (60022263-60022643)
               

               
               994-1388, gnl|Hg17|chr19 (5538411-5538010)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-491, gnl|bosTau2|chr9 (60016827-60017110)
               

               
               208-491, gnl|Hg17|chr19 (5545190-5544910)
               

               
               208-491, gnl|Mm7|chr17 (54776134-54775854)
               


               
               994-1388, gnl|bosTau2|chr9 (60022263-60022643)
               

               
               994-1388, gnl|Hg17|chr19 (5538411-5538010)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nmm (0.265604)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	208-491, gnl\|bosTau2\|chr9 (60016827-60017110)
	208-491, gnl\|Hg17\|chr19 (5545190-5544910)
	208-491, gnl\|Mm7\|chr17 (54776134-54775854)

	994-1388, gnl\|bosTau2\|chr9 (60022263-60022643)
	994-1388, gnl\|Hg17\|chr19 (5538411-5538010)

	nmm (0.265604)
	col (0.195008)
	sto (0.179824)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	lnt (0.142308)
	sug (0.127291)
	nbm (0.0993246)