Non-Coding RNA Search

Ss1.1-rsug21_f2.5

Sequence:


               
               GAATCGGACAGCTCAGGCACTCCCAAGAGGAAACGTGTAGAAAGATGGCACATCAAGACT
CCATGAATCCCGGTTCTACACTTCCAAATCAAGTGTCTAATAGGATAGCATACGTCATAG
GGAAATATCTCAGCCGCAGTCACTAACCTGATAAGCTAGAGAGCAGGCGTTTGTTACACC
ACCATTCAGCAGTCTAGAAATGCATTTCCTACCAATTACACATTTGGTGTGGGACTAGAG
CGGTCTTAAATCTTGGGAAAAGATTTAATTTTCTGTGCATGTGTTCTGCTTCAGGTGTCA
CGTTTACAGTTACAATACTTTTATTGGAATATTTGGAACTCCTAAGATGTTCAACTTTTG
TAACACAGAGAAACACTGTTAAGAAGTCTTATGAAGTTGAAAAGGGAACATGCTGGCTTC
TCAGAATTTTAGACCTGTTTATTATGTCATCTTTTTTGATCACTTAATAATAAATGTGGA
ATGGATCTGAAAGAGTATTTAAAGCAAGTAGAGTCAATCAGTGTTTTAAACATCCTAGCA
GTACCTCCCTGATTTCAGAGCTAGAACATATAAATCAAAGCAACAATGTGGATTTTTGTA
AACAATATTGTAACTTTCACAAAAACAGATGGTCCAATCCCAGGAGCAGATGGTAGTTTG
GACAGCTCTGTGGGGAACGAGCCACAGGTCAGTGGTTCCAGCTATGACAACCCTCAGCAT
TGAAAGCAGCGCAGGGAGAAGCACTGAGTTGGTCCCTGGGGCTGTGTGCAGATACCTACC
TCGCAGAGCTGGTTCCCAGGACTGACCGTTTGGTTCAAACTTTGTGATTTAAGAGTTTGT
CAAGCAGTTATTCTTTTGAATAAAAGCACCATGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCGGACAGCTCAGGCACTCCCAAGAGGAAACGTGTAGAAAGATGGCACATCAAGACT
CCATGAATCCCGGTTCTACACTTCCAAATCAAGTGTCTAATAGGATAGCATACGTCATAG
GGAAATATCTCAGCCGCAGTCACTAACCTGATAAGCTAGAGAGCAGGCGTTTGTTACACC
ACCATTCAGCAGTCTAGAAATGCATTTCCTACCAATTACACATTTGGTGTGGGACTAGAG
CGGTCTTAAATCTTGGGAAAAGATTTAATTTTCTGTGCATGTGTTCTGCTTCAGGTGTCA
CGTTTACAGTTACAATACTTTTATTGGAATATTTGGAACTCCTAAGATGTTCAACTTTTG
TAACACAGAGAAACACTGTTAAGAAGTCTTATGAAGTTGAAAAGGGAACATGCTGGCTTC
TCAGAATTTTAGACCTGTTTATTATGTCATCTTTTTTGATCACTTAATAATAAATGTGGA
ATGGATCTGAAAGAGTATTTAAAGCAAGTAGAGTCAATCAGTGTTTTAAACATCCTAGCA
GTACCTCCCTGATTTCAGAGCTAGAACATATAAATCAAAGCAACAATGTGGATTTTTGTA
AACAATATTGTAACTTTCACAAAAACAGATGGTCCAATCCCAGGAGCAGATGGTAGTTTG
GACAGCTCTGTGGGGAACGAGCCACAGGTCAGTGGTTCCAGCTATGACAACCCTCAGCAT
TGAAAGCAGCGCAGGGAGAAGCACTGAGTTGGTCCCTGGGGCTGTGTGCAGATACCTACC
TCGCAGAGCTGGTTCCCAGGACTGACCGTTTGGTTCAAACTTTGTGATTTAAGAGTTTGT
CAAGCAGTTATTCTTTTGAATAAAAGCACCATGTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               25-688, gnl|bosTau2|chr27 (24044426-24043762)
               

               
               25-688, gnl|Hg17|chr8 (42828494-42827824)
               

               
               25-688, gnl|Mm7|chr8 (24899503-24900150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-688, gnl|bosTau2|chr27 (24044426-24043762)
               

               
               25-688, gnl|Hg17|chr8 (42828494-42827824)
               

               
               25-688, gnl|Mm7|chr8 (24899503-24900150)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               sug (0.127291)

	25-688, gnl\|bosTau2\|chr27 (24044426-24043762)
	25-688, gnl\|Hg17\|chr8 (42828494-42827824)
	25-688, gnl\|Mm7\|chr8 (24899503-24900150)