Non-Coding RNA Search

Ss1.1-rsug22_k21.5

Sequence:


               
               CACACGCGCCACGAGGCGGGGAGATCTCCTGTTGACAGCTTGAGCAGCTGTAGCAGTTCC
TACGACGGCAGCGACCGAGAGGATCACCGGAACGAATTCCACTCCCCCATTGGACTCACC
AGACCTTCGCCGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTCTCTGAAGGA
TGGGCAACATGATCAGATTATTACTTAATAGTTTTTTTTTTTTTCTTGCAGTGTGTGTGT
GTGCTATACCTTAATGGGGAAGGGGGGTCGATATGCATTATATGTGCTGTGTGTGGAAAA
AAAAAGTCAGGTACTCTGTTTTGTAAAAGTACTTTTAAATTGCCTCAGTGATAACAGTAT
AAAGATAAACAGAAATGCTGAGATAAGCTTAGCACTTGAGTTGTACAACAGAACACTTGT
ACAAAATAGATTTTAAGGCTAACTTCTTTTCACTGTTGTGCTCCTTTGCAAAATGTATGT
TACAATAGATAGTGTCATGTTGCAGGTTCAACGTTATTTACATGTAAATAGACAAAAGGA
AACATTTGCCAAAAGCGGCAGATCTTTACTGAAAGAGAGAGCAGCTGTTATGCAACATAT
AGAAAAGTGTATAGATGTTTTGGACAGACCCGGCAAAGGGTGGCCACGGTTAAATGTTAG
GAACACGCCAGGTCACCTAACACCCACCCCAAGAATGCTCACAAACCTGCAGGCACATCA
TTGGCGTATGGCACTCATGAAAAAGGATCGACGACCATTGAAAGAGGACCATACCTATTT
TTAAAAATGTGGAGTTTGAGGGCTAACGTATTTAATTAAATAAATAAATAAATCTGGGTC
TGCATCTCTTATTAAATAAAAATATAAAAATATGTACATTACATTTTGCTTATTTTCATA
TAAAAGGTAAGACAGAGTTTGCAAAGCATTTGTGGCTTTTTGTAGTTTACTTAAGCCAAA
ATGTGTTTTTTTCCCCCTTGATAGCTTCGCTAATATTTTAAACAGTCCTGTAAAAAACCA
AAAGGGACTTTTTGTATAGAAAGCACTACCCTAAGCCATGAAGAACTCCATGCTTTGCTA
ACCAAGATAACTGTTTTCTCTTTGTAGAAGTTTTGTTTTTGAAATGTGTATTTCTAATTA
TATAAAATATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACGCGCCACGAGGCGGGGAGATCTCCTGTTGACAGCTTGAGCAGCTGTAGCAGTTCC
TACGACGGCAGCGACCGAGAGGATCACCGGAACGAATTCCACTCCCCCATTGGACTCACC
AGACCTTCGCCGGACGAAAGGGAAAGTCCCTCAGTCAAGCGCATGCGACTCTCTGAAGGA
TGGGCAACATGATCAGATTATTACTTAATAGTTTTTTTTTTTTTCTTGCAGTGTGTGTGT
GTGCTATACCTTAATGGGGAAGGGGGGTCGATATGCATTATATGTGCTGTGTGTGGAAAA
AAAAAGTCAGGTACTCTGTTTTGTAAAAGTACTTTTAAATTGCCTCAGTGATAACAGTAT
AAAGATAAACAGAAATGCTGAGATAAGCTTAGCACTTGAGTTGTACAACAGAACACTTGT
ACAAAATAGATTTTAAGGCTAACTTCTTTTCACTGTTGTGCTCCTTTGCAAAATGTATGT
TACAATAGATAGTGTCATGTTGCAGGTTCAACGTTATTTACATGTAAATAGACAAAAGGA
AACATTTGCCAAAAGCGGCAGATCTTTACTGAAAGAGAGAGCAGCTGTTATGCAACATAT
AGAAAAGTGTATAGATGTTTTGGACAGACCCGGCAAAGGGTGGCCACGGTTAAATGTTAG
GAACACGCCAGGTCACCTAACACCCACCCCAAGAATGCTCACAAACCTGCAGGCACATCA
TTGGCGTATGGCACTCATGAAAAAGGATCGACGACCATTGAAAGAGGACCATACCTATTT
TTAAAAATGTGGAGTTTGAGGGCTAACGTATTTAATTAAATAAATAAATAAATCTGGGTC
TGCATCTCTTATTAAATAAAAATATAAAAATATGTACATTACATTTTGCTTATTTTCATA
TAAAAGGTAAGACAGAGTTTGCAAAGCATTTGTGGCTTTTTGTAGTTTACTTAAGCCAAA
ATGTGTTTTTTTCCCCCTTGATAGCTTCGCTAATATTTTAAACAGTCCTGTAAAAAACCA
AAAGGGACTTTTTGTATAGAAAGCACTACCCTAAGCCATGAAGAACTCCATGCTTTGCTA
ACCAAGATAACTGTTTTCTCTTTGTAGAAGTTTTGTTTTTGAAATGTGTATTTCTAATTA
TATAAAATATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6WZC9_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6WZC9_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-470, + strand, RNAz p=0.792115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-470, + strand, RNAz p=0.792115

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002397, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002397, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1152, gnl|bosTau2|chr7 (56591591-56592751)
               

               
               1-1152, gnl|Hg17|chr5 (88054368-88053221)
               

               
               1-1152, gnl|Mm7|chr13 (80737412-80738592)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr7 (56591591-56592751)
               

               
               1-1152, gnl|Hg17|chr5 (88054368-88053221)
               

               
               1-1152, gnl|Mm7|chr13 (80737412-80738592)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               isp (0.300752)
               

               
               ill (0.175593)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               isp (0.300752)
               

               
               ill (0.175593)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-1152, gnl\|bosTau2\|chr7 (56591591-56592751)
	1-1152, gnl\|Hg17\|chr5 (88054368-88053221)
	1-1152, gnl\|Mm7\|chr13 (80737412-80738592)

	elu (0.385356)
	isp (0.300752)
	ill (0.175593)
	kid (0.129735)
	sug (0.127291)
	ecc (0.115035)