Non-Coding RNA Search

Ss1.1-rsug22_k9.5

Sequence:


               
               ACATACCATTTGAGTTAAATATATGTAAATGTTTGTGAGAAGAGAGTCGCTATAATAGTC
CTCTCTAAGTAGATTAGTTCAGTATCTAATGGAAGTGAAAATCTTTACTCCTATTATCAC
TATAGTACTGAATGAACTGTATTCAGAGTTTTTCAAACAAGTACTTAAAGTAGAACTTTC
AAATACAAAGCAAGGGCATAAGGATAAAGGTTGTGGTTTGTGTTTCTCTTAGTTTACCAT
CTAAGGCTTTGTTTTTTAATTTAAAAAAAGCTTCAAGTTGTTGCCATTCCTTAGCTTCCT
TAATAATTATGGCTGATGAGTTTTTAACTCTTAAAATTATGTACCTATATTAAGTTTATC
TTAACTCTTACCCTAAGCAAAAAGGAAGGTATACACCTAAGGGATGTAATTATTTTGCAT
TTTTGGCCATGGGTGGGAGAGGGGTGGGAATCTACTTACACCGTTTTTAAAAAAGAAAAA
AATCACAAATATTTTTCTACTATTATATATGATCTTACTTTATACTGGTTTCTCTCTAGT
AAGGCATGCCAGAAGCCCAAGGCACCATATCATGAGTTCATATGTATTGTACCTTTTATT
GGTGGTTAAATCGCATCAGATGCTTGGCACTGCTGCCATAATTATGAAATGCTTGTAAAG
GATTAAATATCACTGAATACTTTAAATTGTTTTACTTAAGAATCTAATCTTGGAAGTTTT
CAGATCATACTATTAATGTGTAATCTAAGCTCTTTCAGATGTATCCATGAATAATCCTGG
AACAATATTGCTTGTATTCCTGTCACAGAACAGGTTTTGTAATCTTTAAAAGAAATGAAA
ATTTATATAATAAAGTTTCGAATAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATACCATTTGAGTTAAATATATGTAAATGTTTGTGAGAAGAGAGTCGCTATAATAGTC
CTCTCTAAGTAGATTAGTTCAGTATCTAATGGAAGTGAAAATCTTTACTCCTATTATCAC
TATAGTACTGAATGAACTGTATTCAGAGTTTTTCAAACAAGTACTTAAAGTAGAACTTTC
AAATACAAAGCAAGGGCATAAGGATAAAGGTTGTGGTTTGTGTTTCTCTTAGTTTACCAT
CTAAGGCTTTGTTTTTTAATTTAAAAAAAGCTTCAAGTTGTTGCCATTCCTTAGCTTCCT
TAATAATTATGGCTGATGAGTTTTTAACTCTTAAAATTATGTACCTATATTAAGTTTATC
TTAACTCTTACCCTAAGCAAAAAGGAAGGTATACACCTAAGGGATGTAATTATTTTGCAT
TTTTGGCCATGGGTGGGAGAGGGGTGGGAATCTACTTACACCGTTTTTAAAAAAGAAAAA
AATCACAAATATTTTTCTACTATTATATATGATCTTACTTTATACTGGTTTCTCTCTAGT
AAGGCATGCCAGAAGCCCAAGGCACCATATCATGAGTTCATATGTATTGTACCTTTTATT
GGTGGTTAAATCGCATCAGATGCTTGGCACTGCTGCCATAATTATGAAATGCTTGTAAAG
GATTAAATATCACTGAATACTTTAAATTGTTTTACTTAAGAATCTAATCTTGGAAGTTTT
CAGATCATACTATTAATGTGTAATCTAAGCTCTTTCAGATGTATCCATGAATAATCCTGG
AACAATATTGCTTGTATTCCTGTCACAGAACAGGTTTTGTAATCTTTAAAAGAAATGAAA
ATTTATATAATAAAGTTTCGAATAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.729759
               

               
               352-470, + strand, RNAz p=0.762434

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.729759
               

               
               352-470, + strand, RNAz p=0.762434

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004586, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004586, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-870, gnl|bosTau2|chrX (39149219-39150096)
               

               
               1-870, gnl|Hg17|chrX (19928551-19927686)
               

               
               1-870, gnl|Mm7|chrX (154141733-154142606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-870, gnl|bosTau2|chrX (39149219-39150096)
               

               
               1-870, gnl|Hg17|chrX (19928551-19927686)
               

               
               1-870, gnl|Mm7|chrX (154141733-154142606)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sag (0.36543)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	40-159, - strand, RNAz p=0.729759
	352-470, + strand, RNAz p=0.762434

	1-870, gnl\|bosTau2\|chrX (39149219-39150096)
	1-870, gnl\|Hg17\|chrX (19928551-19927686)
	1-870, gnl\|Mm7\|chrX (154141733-154142606)

	sag (0.36543)
	sug (0.254582)
	fhi (0.169578)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	tra (0.123092)
	ldo (0.0970026)