Non-Coding RNA Search

Ss1.1-rsug22_m15.5

Sequence:


               
               TGGTATGGAAATGCAATTCTTTAAGGAAAGTTAGCAAAATGAAACCATACTTTGTACCAG
TAAAAGAGAGCAACACAGGCTAAATGTCTTCTTCTGGGGCTAAGGGGTAGAACCCATCTT
GCTTTTACTCTCAAGACTAACTACACAAATTAAGCTTCTTGAACACCACTTTTGTGGGGG
CATCCATACGCTGATCTAGAAATTAAAGCTTCATAGTTCCAATTCTAGATCTCTTAATGC
CAGTTTCTCTCTGGCTTTAGCCTTTGAGAACCTGTTTAAGGATACACAAGCAATCCAGAG
CTGTGAAGAGTTCAAAGGCCAACTCACTCTCTCTGGGTCACCTGCAACCAATAATTGGAT
ACCTTACAATGATGCAGGACAGATCCGAGTCCATGATGAGTTTTCAAAGGCCGTGTTCAT
TTAGGAACCAACTCTCTCTGGATTCTCCTGCTGAGTTCCAGCAGGGTGATGGGCCGAAAT
CCTACCCACACGAAAGACACCTGTGTAACACCAACTAGGTATAGCTGAAGAAGGCTGAAG
GGAGAACTTGGTTAAATGGAAGAATGTACTGATGGTAGCTGGTCTTCTCCACACACTCAT
ATAGTTATACAGCAGAAAATGGGATCATCAGCCAAAATACAACATCATGTCAATATTATT
AAAGAAATAATCTCTCTATGGTTGATTCTGCCATAGCTGCAATCACAGTATTTTCTCCTA
TTTTTCACACTACACAAAGGAGGAAGAAAAACTATTCATGGTCTAAGTAGCCAGAAAAGA
TAGATTCATGGCTTGGAAAGGCAAATTCTAGGCATTCCTTCAAGGACTGATGCATTAAAA
TCAGCATTGATTTTTTTTTTTTTTTACACCTAGGATTTTTTAGCCTGGGAAGGTAGGTTG
AAGCCAAGTCCCTCTGCAGGAAAAAGCTTATTTTTAAACTCAGAAAATGGCAATCATGAA
AATCTACTTCAACTTTAGCAAAAAGAAAAAAAATCAACAAAAAATATACTCTGTATGCTG
GGATTCCAAGGTTCCAACATGCCGCTACAAATCTGTGGGGGGGTTCTTTCTTCTGATAAT
TCTAGAGCCTGTTACCATAGAAAGGCATTTCTTCAATGGCTGGTTGTAGTTAGTTCATGT
TTTTCAATCAAAATTTGCAAATGTATTTGTTGCTGTATAGTGATTGTTTTGCAAAATAAA
ATTGCTTGTCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTATGGAAATGCAATTCTTTAAGGAAAGTTAGCAAAATGAAACCATACTTTGTACCAG
TAAAAGAGAGCAACACAGGCTAAATGTCTTCTTCTGGGGCTAAGGGGTAGAACCCATCTT
GCTTTTACTCTCAAGACTAACTACACAAATTAAGCTTCTTGAACACCACTTTTGTGGGGG
CATCCATACGCTGATCTAGAAATTAAAGCTTCATAGTTCCAATTCTAGATCTCTTAATGC
CAGTTTCTCTCTGGCTTTAGCCTTTGAGAACCTGTTTAAGGATACACAAGCAATCCAGAG
CTGTGAAGAGTTCAAAGGCCAACTCACTCTCTCTGGGTCACCTGCAACCAATAATTGGAT
ACCTTACAATGATGCAGGACAGATCCGAGTCCATGATGAGTTTTCAAAGGCCGTGTTCAT
TTAGGAACCAACTCTCTCTGGATTCTCCTGCTGAGTTCCAGCAGGGTGATGGGCCGAAAT
CCTACCCACACGAAAGACACCTGTGTAACACCAACTAGGTATAGCTGAAGAAGGCTGAAG
GGAGAACTTGGTTAAATGGAAGAATGTACTGATGGTAGCTGGTCTTCTCCACACACTCAT
ATAGTTATACAGCAGAAAATGGGATCATCAGCCAAAATACAACATCATGTCAATATTATT
AAAGAAATAATCTCTCTATGGTTGATTCTGCCATAGCTGCAATCACAGTATTTTCTCCTA
TTTTTCACACTACACAAAGGAGGAAGAAAAACTATTCATGGTCTAAGTAGCCAGAAAAGA
TAGATTCATGGCTTGGAAAGGCAAATTCTAGGCATTCCTTCAAGGACTGATGCATTAAAA
TCAGCATTGATTTTTTTTTTTTTTTACACCTAGGATTTTTTAGCCTGGGAAGGTAGGTTG
AAGCCAAGTCCCTCTGCAGGAAAAAGCTTATTTTTAAACTCAGAAAATGGCAATCATGAA
AATCTACTTCAACTTTAGCAAAAAGAAAAAAAATCAACAAAAAATATACTCTGTATGCTG
GGATTCCAAGGTTCCAACATGCCGCTACAAATCTGTGGGGGGGTTCTTTCTTCTGATAAT
TCTAGAGCCTGTTACCATAGAAAGGCATTTCTTCAATGGCTGGTTGTAGTTAGTTCATGT
TTTTCAATCAAAATTTGCAAATGTATTTGTTGCTGTATAGTGATTGTTTTGCAAAATAAA
ATTGCTTGTCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               144-330, - strand, RNAz p=0.992146
               

               
               371-530, - strand, RNAz p=0.587398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-330, - strand, RNAz p=0.992146
               

               
               371-530, - strand, RNAz p=0.587398

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               146-321, DG2-47e3 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO591256.1|), blast E-value=0, identity=92.61% 
               

               
               144-321, LIB3934-021-A1-K1-E12 LIB3934 Canis familiaris cDNA clone 
(gb|DN394134.1|), blast E-value=0, identity=93.82% 
               

               
               144-321, LIB3934-048-A1-K1-H8 LIB3934 Canis familiaris cDNA clone 
(gb|DN394604.1|), blast E-value=0, identity=93.82% 
               

               
               144-330, LB01821.CR_B20 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE223621.1|), 
blast E-value=0, identity=91.44% 
               

               
               144-330, LB02532.CR_I09 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340155.1|), 
blast E-value=0, identity=91.44% 
               

               
               144-330, LB02753.CR_C13 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348757.1|), 
blast E-value=0, identity=91.44%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               146-321, DG2-47e3 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO591256.1|), blast E-value=0, identity=92.61% 
               

               
               144-321, LIB3934-021-A1-K1-E12 LIB3934 Canis familiaris cDNA clone 
(gb|DN394134.1|), blast E-value=0, identity=93.82% 
               

               
               144-321, LIB3934-048-A1-K1-H8 LIB3934 Canis familiaris cDNA clone 
(gb|DN394604.1|), blast E-value=0, identity=93.82% 
               

               
               144-330, LB01821.CR_B20 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE223621.1|), 
blast E-value=0, identity=91.44% 
               

               
               144-330, LB02532.CR_I09 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340155.1|), 
blast E-value=0, identity=91.44% 
               

               
               144-330, LB02753.CR_C13 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE348757.1|), 
blast E-value=0, identity=91.44%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-1215, gnl|bosTau2|chr2 (54256297-54255130)
               

               
               36-1215, gnl|Hg17|chr2 (210423127-210424341)
               

               
               36-1215, gnl|Mm7|chr1 (66681096-66682290)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-1215, gnl|bosTau2|chr2 (54256297-54255130)
               

               
               36-1215, gnl|Hg17|chr2 (210423127-210424341)
               

               
               36-1215, gnl|Mm7|chr1 (66681096-66682290)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fco (1.10046)
               

               
               spc (0.906927)
               

               
               fhi (0.678311)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.10046)
               

               
               spc (0.906927)
               

               
               fhi (0.678311)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               fce (0.543183)
               

               
               cbe (0.478469)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               csk (0.140746)
               

               
               ecc (0.115035)

	144-330, - strand, RNAz p=0.992146
	371-530, - strand, RNAz p=0.587398

	146-321, DG2-47e3 DG2-brain Canis familiaris cDNA 3', mRNA sequence (gb\|CO591256.1\|), blast E-value=0, identity=92.61%
	144-321, LIB3934-021-A1-K1-E12 LIB3934 Canis familiaris cDNA clone (gb\|DN394134.1\|), blast E-value=0, identity=93.82%
	144-321, LIB3934-048-A1-K1-H8 LIB3934 Canis familiaris cDNA clone (gb\|DN394604.1\|), blast E-value=0, identity=93.82%
	144-330, LB01821.CR_B20 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE223621.1\|), blast E-value=0, identity=91.44%
	144-330, LB02532.CR_I09 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE340155.1\|), blast E-value=0, identity=91.44%
	144-330, LB02753.CR_C13 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE348757.1\|), blast E-value=0, identity=91.44%

	36-1215, gnl\|bosTau2\|chr2 (54256297-54255130)
	36-1215, gnl\|Hg17\|chr2 (210423127-210424341)
	36-1215, gnl\|Mm7\|chr1 (66681096-66682290)

	fco (1.10046)
	spc (0.906927)
	fhi (0.678311)
	fcc (0.593354)
	ebs (0.591506)
	fce (0.543183)
	cbe (0.478469)
	liv (0.292569)
	hyp (0.285673)
	sug (0.254582)
	ece (0.229305)
	fbs (0.175346)
	csk (0.140746)
	ecc (0.115035)