Non-Coding RNA Search

Ss1.1-rsug24_h14.5

Sequence:


               
               GATGAGACCGAAATCGAAGAGACCTTTCAAGCTGCGATGCCCCAGGTGCCCTATCGAGTG
CTTGGGAGAATGTTCTGGAGGGAAGAGAATGCCAAAGCAGCCTTGTTAGAGCTCACTGGT
GCTGTCGATTATGCTGCGATCCCCAGGGAGATGCCAGGTAAAGGAGGGGTCTGGAAAGTA
GTCTTTAAGCCCCCCACTTCCGATGCTGAATTTTTAGAAAGGTTGCACCTCTTCCTAGCA
AGAGAGGGGTGGACCGTGCAAGATGTTGCCCGTGTCCTTGGGTTTCAGAACCCCACTCCG
GCCCCAGGCCCCGAAATGCCGGCAGAGATGCTAAACTATATTTTGGATAATGTTATTCAG
CCTCTGGTTGAGTCCATATGGTACAAGAAGCTGACGTTGTTCTCGGGAAGGGACATTCCG
GGGCCAGGGGAGGAGGCATTTGATCCCTGGCTGGAGCACACTAATGAGGTCATAGAGGAG
TGGCAGGTGCCTGATGTAGAAAAGAGGCGGCGGTTGATGGAGAGCCTTAGAGGCCCTGCC
GCTGATGTCATCCGCATCCTCAAGACCAACAACCCTGCGATTACCACCGCTGAATGCCTG
AAGGCGCTGGAGCAGGTGTTTGGGAGCGTCGAGAGCTCTAGGGATGCGCAGGTGAGATTT
CTGAACACATACCAGAACCCGGGAGAAAAATTATCTGCTTATGTGATTCGTCTGGAGCCT
CTGCTGCAGAAGGTGGTTGAGAAGGGGGCCATAGATAAAGATAACGTGAACCAGGCCCGC
CTGGAGCAGGTCATTGCCGGGGCCAATCACAGCGGAGCCATCCGAAGGCAGTTGTGGCTG
ACCGGGGCTGCTGAAGGGCCGGCCCCCAACCTCTTCCAGTTGCTGGTGCAGATCCGCGAG
GAGGAGGCCAAGGAAGAGGAGGAGGAGGCTGAGGCCGCCCTCCTGCAGTTAGGCCTGGAG
GGGCACTTCTGAGTCCCAGGAAAGGGGGCGTTAGTTCAGACCTAGATCACGGCTGCTTTC
ATTGTCTCTGTGATGTCTTACAGGTGTGTCTCCTGCTAGTAAAGACTAAGCGGTGTTTTT
TGTTTTTGGGCGGGAGTCCGGCCTGGGTATTCATGTGTCATTAGCACAATCGTGCAGGGG
AGCACCAGATCTGCTGCAGCGCTCGTGGGTCATGCTAGCTACAATGCCAGGGAAAGGCTT
GGACGTGAGTCCTCATTGCAAGCTATCATCATGGCACCATCATCGGTTGTGAAAAATGTG
GTCTCGTGACTCTTCCCATCAAGGTAATTAAATATGAAATTGCATGTTCAGATGTATAAT
GAGTGCAGGGCCTGGATACCAAAAGAACTGTTCAGTAAAAAATGTCAACTGTTTACTCTT
AACTGTGGTGAATAGTTTTTGTGTCTACCGTAAATTGTTCCTGGTTTATATTAATGGAAA
GAAATGTGAATAAGGTATTATTCAGCTTTACAGTGCAGATTTCTTACTGTACATCTTTAA
AGATCTAGATCAGTTTAATTGAAAAGTGTTCTGAGACTACAAAATGGGGTGTTAGAACGA
TACTGCGCTTACAGGGCTGTGTAAATCAAGTTTTCACTGTGTAAGATGCAGATATAAAAT
GCATGGGGAGGTTAATAGGAACCAGTTACAGCATCTATTCCCCCATTTCAAATCTTTGTC
ATTGAAGAGTAGTTTACCATGTTCATGCTGATTCTAAATGTTTTAAATTCGAAGTTATCA
AATACATGTATATTAATAAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGACCGAAATCGAAGAGACCTTTCAAGCTGCGATGCCCCAGGTGCCCTATCGAGTG
CTTGGGAGAATGTTCTGGAGGGAAGAGAATGCCAAAGCAGCCTTGTTAGAGCTCACTGGT
GCTGTCGATTATGCTGCGATCCCCAGGGAGATGCCAGGTAAAGGAGGGGTCTGGAAAGTA
GTCTTTAAGCCCCCCACTTCCGATGCTGAATTTTTAGAAAGGTTGCACCTCTTCCTAGCA
AGAGAGGGGTGGACCGTGCAAGATGTTGCCCGTGTCCTTGGGTTTCAGAACCCCACTCCG
GCCCCAGGCCCCGAAATGCCGGCAGAGATGCTAAACTATATTTTGGATAATGTTATTCAG
CCTCTGGTTGAGTCCATATGGTACAAGAAGCTGACGTTGTTCTCGGGAAGGGACATTCCG
GGGCCAGGGGAGGAGGCATTTGATCCCTGGCTGGAGCACACTAATGAGGTCATAGAGGAG
TGGCAGGTGCCTGATGTAGAAAAGAGGCGGCGGTTGATGGAGAGCCTTAGAGGCCCTGCC
GCTGATGTCATCCGCATCCTCAAGACCAACAACCCTGCGATTACCACCGCTGAATGCCTG
AAGGCGCTGGAGCAGGTGTTTGGGAGCGTCGAGAGCTCTAGGGATGCGCAGGTGAGATTT
CTGAACACATACCAGAACCCGGGAGAAAAATTATCTGCTTATGTGATTCGTCTGGAGCCT
CTGCTGCAGAAGGTGGTTGAGAAGGGGGCCATAGATAAAGATAACGTGAACCAGGCCCGC
CTGGAGCAGGTCATTGCCGGGGCCAATCACAGCGGAGCCATCCGAAGGCAGTTGTGGCTG
ACCGGGGCTGCTGAAGGGCCGGCCCCCAACCTCTTCCAGTTGCTGGTGCAGATCCGCGAG
GAGGAGGCCAAGGAAGAGGAGGAGGAGGCTGAGGCCGCCCTCCTGCAGTTAGGCCTGGAG
GGGCACTTCTGAGTCCCAGGAAAGGGGGCGTTAGTTCAGACCTAGATCACGGCTGCTTTC
ATTGTCTCTGTGATGTCTTACAGGTGTGTCTCCTGCTAGTAAAGACTAAGCGGTGTTTTT
TGTTTTTGGGCGGGAGTCCGGCCTGGGTATTCATGTGTCATTAGCACAATCGTGCAGGGG
AGCACCAGATCTGCTGCAGCGCTCGTGGGTCATGCTAGCTACAATGCCAGGGAAAGGCTT
GGACGTGAGTCCTCATTGCAAGCTATCATCATGGCACCATCATCGGTTGTGAAAAATGTG
GTCTCGTGACTCTTCCCATCAAGGTAATTAAATATGAAATTGCATGTTCAGATGTATAAT
GAGTGCAGGGCCTGGATACCAAAAGAACTGTTCAGTAAAAAATGTCAACTGTTTACTCTT
AACTGTGGTGAATAGTTTTTGTGTCTACCGTAAATTGTTCCTGGTTTATATTAATGGAAA
GAAATGTGAATAAGGTATTATTCAGCTTTACAGTGCAGATTTCTTACTGTACATCTTTAA
AGATCTAGATCAGTTTAATTGAAAAGTGTTCTGAGACTACAAAATGGGGTGTTAGAACGA
TACTGCGCTTACAGGGCTGTGTAAATCAAGTTTTCACTGTGTAAGATGCAGATATAAAAT
GCATGGGGAGGTTAATAGGAACCAGTTACAGCATCTATTCCCCCATTTCAAATCTTTGTC
ATTGAAGAGTAGTTTACCATGTTCATGCTGATTCTAAATGTTTTAAATTCGAAGTTATCA
AATACATGTATATTAATAAAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55641029|ref|XP_510052.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55641029|ref|XP_510052.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               801-1000, + strand, RNAz p=0.977558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-1000, + strand, RNAz p=0.977558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1764, gnl|bosTau2|chr10 (60278832-60277092)
               

               
               1-1764, gnl|Hg17|chr14 (73250005-73248251)
               

               
               1-1764, gnl|Mm7|chr12 (82143773-82142081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1764, gnl|bosTau2|chr10 (60278832-60277092)
               

               
               1-1764, gnl|Hg17|chr14 (73250005-73248251)
               

               
               1-1764, gnl|Mm7|chr12 (82143773-82142081)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-1764, gnl\|bosTau2\|chr10 (60278832-60277092)
	1-1764, gnl\|Hg17\|chr14 (73250005-73248251)
	1-1764, gnl\|Mm7\|chr12 (82143773-82142081)

	sug (0.254582)
	pgl (0.236967)
	sag (0.182715)
	cut (0.169924)
	cki (0.165235)
	fat (0.147427)
	spc (0.113366)
	jej (0.0989218)