Non-Coding RNA Search

Ss1.1-rsug24_h24.5

Sequence:


               
               TGCATTTTAATTGCAATGAGTCATTTAAGCTGCCATTCCAACTTGCTCAGCACACAAAAA
GTCACAGGATATTTCAAGCTCAGTGTAGTTTTCCAGAATGCCATGAGCTTTTTGAAGATC
TTCCTCTGCTCTATGAACATGAAGCTCAACACTATTTAAGTAAAACACCAGAATCATCTG
CACAACCAAGTGAAGCAATTCTTTGGGATGTTCTTACAGACTCAAAATCTAATCATCAGG
AAAAAGACTCATCTAGTAATGAGAAACAAACTATTAGTCTGCCAGTTTCTACTAGCAAAT
CAAGGAAAGATTCTACAGAACCAAAGACATGTATAGAAAGTACAGAAAAGAAAACAGACC
GTTTAATTCAGAATGGAAATGAACATTCTGATGACACTGTTTCTGATATAAGCTTGATAG
ACCAAAAGATGCCTAACATAGAGCCAAATTCTGAAAATAATTGTAGTGTTAGTGATTTAG
TCAATGGACACAGTGGAATAGAGCAAACACCTTTAGTTTCATCAAATCCTGCTTTGAAAA
TTGATACAAACAGAATCAGGACAGAAAACGGTTCCATTTTACCCAGTGTTGTACCACAAG
AACACAGTACCCTGCCAGTATCTCAGGCACCTTCCAAACCAAATCTGACAAGTGAACATA
CTTCATATGGCTTAATTTTAACAAAGCCATATGTCAGACCATTGCCTCCCAGTTACCTTG
ATGAGCGGTACCTTAGTATGCCAAAACGCAGAAAATTTCTGACTGATAGGGTAGATGCCT
GTTCTGATCAAGATAACGTTTGTAAAAAATCTGTGAAAAGATTAAGATGTGGCAAATGCC
TGACCACCTACTGTAATGCAGAAGCACTTGAGGCTCACCTTGCACAAAAGAAATGTCAGA
CACTCTTTGGATTTGATTCAGATGATGAAAGTAAGTCTTCTATCTTCTCAGTAGGTATAT
CTGCGTAGCTCTGCCAGGCGCTCTTCTGGAGGAGGGTCTCTTGAAGAGCTCAGAGATTCG
TTTTCCTTTGTGGAAGGTCAGTGTCCCTGGTGTAAACGCGGCGCTTCCTTAAAGTGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATTTTAATTGCAATGAGTCATTTAAGCTGCCATTCCAACTTGCTCAGCACACAAAAA
GTCACAGGATATTTCAAGCTCAGTGTAGTTTTCCAGAATGCCATGAGCTTTTTGAAGATC
TTCCTCTGCTCTATGAACATGAAGCTCAACACTATTTAAGTAAAACACCAGAATCATCTG
CACAACCAAGTGAAGCAATTCTTTGGGATGTTCTTACAGACTCAAAATCTAATCATCAGG
AAAAAGACTCATCTAGTAATGAGAAACAAACTATTAGTCTGCCAGTTTCTACTAGCAAAT
CAAGGAAAGATTCTACAGAACCAAAGACATGTATAGAAAGTACAGAAAAGAAAACAGACC
GTTTAATTCAGAATGGAAATGAACATTCTGATGACACTGTTTCTGATATAAGCTTGATAG
ACCAAAAGATGCCTAACATAGAGCCAAATTCTGAAAATAATTGTAGTGTTAGTGATTTAG
TCAATGGACACAGTGGAATAGAGCAAACACCTTTAGTTTCATCAAATCCTGCTTTGAAAA
TTGATACAAACAGAATCAGGACAGAAAACGGTTCCATTTTACCCAGTGTTGTACCACAAG
AACACAGTACCCTGCCAGTATCTCAGGCACCTTCCAAACCAAATCTGACAAGTGAACATA
CTTCATATGGCTTAATTTTAACAAAGCCATATGTCAGACCATTGCCTCCCAGTTACCTTG
ATGAGCGGTACCTTAGTATGCCAAAACGCAGAAAATTTCTGACTGATAGGGTAGATGCCT
GTTCTGATCAAGATAACGTTTGTAAAAAATCTGTGAAAAGATTAAGATGTGGCAAATGCC
TGACCACCTACTGTAATGCAGAAGCACTTGAGGCTCACCTTGCACAAAAGAAATGTCAGA
CACTCTTTGGATTTGATTCAGATGATGAAAGTAAGTCTTCTATCTTCTCAGTAGGTATAT
CTGCGTAGCTCTGCCAGGCGCTCTTCTGGAGGAGGGTCTCTTGAAGAGCTCAGAGATTCG
TTTTCCTTTGTGGAAGGTCAGTGTCCCTGGTGTAAACGCGGCGCTTCCTTAAAGTGAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10437184|dbj|BAB15007.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10437184|dbj|BAB15007.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-719, - strand, RNAz p=0.890688

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-719, - strand, RNAz p=0.890688

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-963, gnl|bosTau2|chr1 (20035117-20034155)
               

               
               1-963, gnl|Hg17|chr3 (88271962-88272921)
               

               
               1-963, gnl|Mm7|chr16 (64731962-64731027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-963, gnl|bosTau2|chr1 (20035117-20034155)
               

               
               1-963, gnl|Hg17|chr3 (88271962-88272921)
               

               
               1-963, gnl|Mm7|chr16 (64731962-64731027)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               bla (0.124347)

	1-963, gnl\|bosTau2\|chr1 (20035117-20034155)
	1-963, gnl\|Hg17\|chr3 (88271962-88272921)
	1-963, gnl\|Mm7\|chr16 (64731962-64731027)