Non-Coding RNA Search

Ss1.1-rsug24_m12.5

Sequence:


               
               AAAACCATCCTAGAAAGATGAGCCCACTTGGTCAGATGTGCCAATCATTCCCAGTTTTAA
AGAGGAAAATGCTTTCCACATTGCTTCCAATGGGATATGGCTATGCTTCCTCGTTTTTCT
CTTGGTACCGTAGCAGTGAGGGAAACACCAGTCTCAGAAGAGCAGGTGAGGTTTCCAGGG
ACATCGGATCTATATTTGGGATTGTATTTTCATTCATTCCCTTTTACAGCATAGCATTCT
GGTACCTTGCTCCCTGAATTTGTCTCCATGCTACAAGCAGGCTTTCTTCACATTCTGGCT
TACACGGGAACACAACTCTTCCACAAGTGGCCTTTAGTGCTCTTTATAATATGATTTCCT
GTAATTTTTAAACTGTATGTGTAATTTATATTCTGGCTCTGTCCGATATTTGAACAACTT
TAATAGGTTGATTTCCATATATATTATGCAGACAATTCTTACCTGGTTTTTTTTTATGTT
CTATCTTAAAATAAATACTGCACCACTTATTAATAAATAGACATTTCAATGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACCATCCTAGAAAGATGAGCCCACTTGGTCAGATGTGCCAATCATTCCCAGTTTTAA
AGAGGAAAATGCTTTCCACATTGCTTCCAATGGGATATGGCTATGCTTCCTCGTTTTTCT
CTTGGTACCGTAGCAGTGAGGGAAACACCAGTCTCAGAAGAGCAGGTGAGGTTTCCAGGG
ACATCGGATCTATATTTGGGATTGTATTTTCATTCATTCCCTTTTACAGCATAGCATTCT
GGTACCTTGCTCCCTGAATTTGTCTCCATGCTACAAGCAGGCTTTCTTCACATTCTGGCT
TACACGGGAACACAACTCTTCCACAAGTGGCCTTTAGTGCTCTTTATAATATGATTTCCT
GTAATTTTTAAACTGTATGTGTAATTTATATTCTGGCTCTGTCCGATATTTGAACAACTT
TAATAGGTTGATTTCCATATATATTATGCAGACAATTCTTACCTGGTTTTTTTTTATGTT
CTATCTTAAAATAAATACTGCACCACTTATTAATAAATAGACATTTCAATGAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               148-258, - strand, RNAz p=0.575758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-258, - strand, RNAz p=0.575758

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-532, gnl|bosTau2|chr14 (4828789-4829324)
               

               
               1-532, gnl|Hg17|chr8 (133202821-133202290)
               

               
               1-532, gnl|Mm7|chr15 (66070305-66069757)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr14 (4828789-4829324)
               

               
               1-532, gnl|Hg17|chr8 (133202821-133202290)
               

               
               1-532, gnl|Mm7|chr15 (66070305-66069757)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

	1-532, gnl\|bosTau2\|chr14 (4828789-4829324)
	1-532, gnl\|Hg17\|chr8 (133202821-133202290)
	1-532, gnl\|Mm7\|chr15 (66070305-66069757)