Ss1.1-rsug24_m8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACATGAAGCCCATCACTGTGGGGGGCAAGATGTAGGGTCTCTGTGTGCCATTGCAGGG GTCTTAACCATTGCTTTGCCAGTGCCAGTGATGTCTCTAACTTTAACTATTTCTACCACA GAGAGACTGAAAATGAGGAACAGACACAGCTGACACAAAATGCAGTCAGTGGCCCATACC TCCCTTCTAATTTGCTGAAGAAATTTCGGAGCTCTACTTCTTCTTCCCTGGGGGACAAGT CAGAGTATCTAGAGATGGAAGAAGGAGTTAAGGAGTCTCTCTGTGCAAAGGAGAAGTGTC AGGGAAAGGGGGATGACAGTGAGACAGACAAAAACAACTGTTCTAATGCAAAGGCTGTGG AGACTGATGTGTGAATCTCGTTCTCCACCCACCACTGCCCCCTTCCCCCAATCCCAGCAT CTCCAAATATATTTATGCATAGAGAGTGCAGTTACGAAAATGAAATATGCAAATGAATCC AATGCATATAGTAGTACGCCATTTAATGGTTATACATGGCATAATTGTTACTAAACTTGT ATTACATATCAAATAAATGATACATCTTGGAGAAGAGGGAGGCTTACATAGGAGCAAATC TATCTTTATATTTTTTATTAGAATGCAAGAATTTTGCACATTAACTGGAAGAGGTGTTAC AAGTAGAGATAGTTTGGTGGAGAGAATGTATGTGTGTGTGTGTGTGTGTGTGTACACGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACATGAAGCCCATCACTGTGGGGGGCAAGATGTAGGGTCTCTGTGTGCCATTGCAGGG GTCTTAACCATTGCTTTGCCAGTGCCAGTGATGTCTCTAACTTTAACTATTTCTACCACA GAGAGACTGAAAATGAGGAACAGACACAGCTGACACAAAATGCAGTCAGTGGCCCATACC TCCCTTCTAATTTGCTGAAGAAATTTCGGAGCTCTACTTCTTCTTCCCTGGGGGACAAGT CAGAGTATCTAGAGATGGAAGAAGGAGTTAAGGAGTCTCTCTGTGCAAAGGAGAAGTGTC AGGGAAAGGGGGATGACAGTGAGACAGACAAAAACAACTGTTCTAATGCAAAGGCTGTGG AGACTGATGTGTGAATCTCGTTCTCCACCCACCACTGCCCCCTTCCCCCAATCCCAGCAT CTCCAAATATATTTATGCATAGAGAGTGCAGTTACGAAAATGAAATATGCAAATGAATCC AATGCATATAGTAGTACGCCATTTAATGGTTATACATGGCATAATTGTTACTAAACTTGT ATTACATATCAAATAAATGATACATCTTGGAGAAGAGGGAGGCTTACATAGGAGCAAATC TATCTTTATATTTTTTATTAGAATGCAAGAATTTTGCACATTAACTGGAAGAGGTGTTAC AAGTAGAGATAGTTTGGTGGAGAGAATGTATGTGTGTGTGTGTGTGTGTGTGTACACGTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 176-294, + strand, RNAz p=0.834248 | |
| 435-594, + strand, RNAz p=0.892849 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-294, + strand, RNAz p=0.834248 | |
| 435-594, + strand, RNAz p=0.892849 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002233, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-294, gnl|bosTau2|chr15 (37813133-37812838) | |
| 1-294, gnl|canFam2|chr21 (53308658-53308953) | |
| 1-294, gnl|danRer3|chr7 (22628642-22628940) | |
| 1-294, gnl|dasNov1|scaffold_3783 (26033-25740) | |
| 1-294, gnl|echTel1|scaffold_304200 (47956-47661) | |
| 1-294, gnl|fr1|chrUn (94916383-94916678) | |
| 1-294, gnl|galGal2|chr3 (44032836-44032541) | |
| 1-294, gnl|hg17|chr11 (29988925-29989220) | |
| 1-294, gnl|Hg17|chr11 (29989218-29988924) | |
| 1-294, gnl|loxAfr1|scaffold_5841 (32887-32592) | |
| 1-294, gnl|mm7|chr2 (107147591-107147296) | |
| 1-294, gnl|Mm7|chr2 (107147296-107147590) | |
| 1-294, gnl|monDom2|scaffold_10 (75835399-75835694) | |
| 1-294, gnl|oryCun1|scaffold_185854 (65747-66041) | |
| 1-294, gnl|panTro1|chr9 (30334600-30334895) | |
| 1-294, gnl|rheMac2|chr14 (41764178-41763883) | |
| 1-294, gnl|rn3|chr3 (92680181-92679886) | |
| 1-294, gnl|tetNig1|chr5 (11139570-11139865) | |
| 1-294, gnl|xenTro1|scaffold_331 (186749-186454) | |
| 395-712, gnl|bosTau2|chr15 (37812785-37812470) | |
| 395-712, gnl|Hg17|chr11 (29988824-29988526) | |
| 395-712, gnl|Mm7|chr2 (107147685-107147994) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-294, gnl|bosTau2|chr15 (37813133-37812838) | |
| 1-294, gnl|canFam2|chr21 (53308658-53308953) | |
| 1-294, gnl|danRer3|chr7 (22628642-22628940) | |
| 1-294, gnl|dasNov1|scaffold_3783 (26033-25740) | |
| 1-294, gnl|echTel1|scaffold_304200 (47956-47661) | |
| 1-294, gnl|fr1|chrUn (94916383-94916678) | |
| 1-294, gnl|galGal2|chr3 (44032836-44032541) | |
| 1-294, gnl|hg17|chr11 (29988925-29989220) | |
| 1-294, gnl|Hg17|chr11 (29989218-29988924) | |
| 1-294, gnl|loxAfr1|scaffold_5841 (32887-32592) | |
| 1-294, gnl|mm7|chr2 (107147591-107147296) | |
| 1-294, gnl|Mm7|chr2 (107147296-107147590) | |
| 1-294, gnl|monDom2|scaffold_10 (75835399-75835694) | |
| 1-294, gnl|oryCun1|scaffold_185854 (65747-66041) | |
| 1-294, gnl|panTro1|chr9 (30334600-30334895) | |
| 1-294, gnl|rheMac2|chr14 (41764178-41763883) | |
| 1-294, gnl|rn3|chr3 (92680181-92679886) | |
| 1-294, gnl|tetNig1|chr5 (11139570-11139865) | |
| 1-294, gnl|xenTro1|scaffold_331 (186749-186454) | |
| 395-712, gnl|bosTau2|chr15 (37812785-37812470) | |
| 395-712, gnl|Hg17|chr11 (29988824-29988526) | |
| 395-712, gnl|Mm7|chr2 (107147685-107147994) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.254582) |