Non-Coding RNA Search

Ss1.1-rsug24_n8.5

Sequence:


               
               GAGATTCTCTCCCTGAATCTGTCACTAACTTGCTGCGTGACCTGAACACGTCATTTTACC
TCTCTGTGCCTCAGTTTTCCCATGCATTAAAAATAAAAAATAAAATGGGGATTCTAATGT
TTGTAAGTGCTTTGAGATCCTTGATCAACAGGTGCTATTGGAGTGCAAAGTGTTATCCTT
GCATGTTTGAGTCATGAGATAATCAGTTTTAACCCAAAGTCATTGGATTATTTATATGAA
GTCCATAATGTTCGCGTACCTCAGGGACATTTAAGAGTTGGAGGTGCAAATATATTCCAA
AAGGGTGCAACAGACACAGTGTATCCCCCTGCTTCAGTTTTTGTATATTTTTGCTACTTG
GTTTTTCTTGATCATAGCTATTTTGTGCTTGGTCTATGTTGTCTTAAAATGCAGTATCCT
GTACTAGCTTATAATATTCCCATACCAAAGTCATGGGGAAACCAACATTATTTTGTTTTT
GGTTTATTTATACTATATTCTGCATACAGTACTTTAAATGCCAATTACAGTGCAATCTTT
ATTTATTGTAAAATTTTTAAAATGTACTTATGTACTAATTTTCCCTTGTAGCATGTTATT
TTTTTTTGTGTTTTATACTTTTGTAATTTTAGGTCAGTCTTGTTCCTTGGTAACATCTGT
AGTAGTATCATTCTTCTGACATTTTCTTGTGTTTTTAAAGATAAAGAGCATCTAGTGCAT
TAAATGCCAAAAAAAAAAATCCATTATCAGTGATTGAAACGTTTACATGAACCCAAAAAA
AAAATCATCTCTTGAAAGAAAGTGCTAAGATCAATGATTATTCTGTGTGCCTACATTGAT
GTAGTACTAGAAAATTCTGTATTTTCGTCATTGACTATATTAGTTGAATTAGCCTTGCAA
ACTGATGGCATCAAGGTAAACATATATTTGCCAAAGTTCTGGCCTTCCAAAACTCATTCC
TCTCAATGTATAATATGACCCAGTGTAACATTGCATCTGCATTTTCTGAAACAATTTCAT
GCAGGTGTTTTGGGGAGATGGCATTTTTTTAAGCAATGAAGATTCAACTGAGTACAAGAA
CCCCGTTTGCAGGAGGAAAAAAAAAAAAAGCCCCTTTTTGGAAACACTTCAGAACTGCTG
CTATCAAGAAATTCTCTGAATTGGTTTAAATTTTTTAATGAAATATTTTAGACCAAAACC
GCTATGAATATTTTGATCTTTTTGAGATGTTCATACTATCTACTTTGCCCCTGGAAAGCT
GAAGTGTGTGAAACACTAGCTGATGGCACTTTATTTTATTGCTCTCCAATATTCAGTGGT
ATTCATTATAATTTCCTTAGGTCAAAAAAATGGTTCCTCTATCTGGCTCTGTTTTCTATC
ACAAATATGTATATGTGATACTGATATAGAACTATATATATATTGCCATTACACACGAAC
AATAAAATAAAGTGTTATGTTAACCTTCTCTCTTTGCCCTTTTGCAGTATGTAGAAACGA
GTGAATGGCTTTCTGATGCTCTGTATGTCAGACTCCTCCCTGGCACAAGAAATTCCAGTC
ATGTGAAGCAAAATGCTCTTTGTCATCAAATTGTTTAAAAAGAAAACTTTTTAAAAAAAT
TTTTGCATATTAGCTGCCTTGTTCTTATCAACTTGAAACGTTGGCATTTTCTAACCATGT
TTTGTTGGCTACAGTAATTCAGTATTCCTGTCAAAATTGAAAAGTGCCCTAATTGAATGT
GTTTGAATGTTATCCTTGCACAATTCTTTAAATTGAAAGACAAAATGTTTTACCTCACTG
TTGGACATACATTCCAAACTTTTCAACTTTAGGAGAAAAAAAAAAAATAATCATACGTTA
TCCTGTATTGTAAATTTTAGACTATTTCATATACATTGTATTAAAACTGCCATATCAATT
TTAATGTATAGATTTTGCAAATACTATGCTATATGTAATACCTAACTGTATCTGTAGTGT
ATATGTAATATATTTATGCCCAATAAATGTTTTAAATCTTTCTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTCTCTCCCTGAATCTGTCACTAACTTGCTGCGTGACCTGAACACGTCATTTTACC
TCTCTGTGCCTCAGTTTTCCCATGCATTAAAAATAAAAAATAAAATGGGGATTCTAATGT
TTGTAAGTGCTTTGAGATCCTTGATCAACAGGTGCTATTGGAGTGCAAAGTGTTATCCTT
GCATGTTTGAGTCATGAGATAATCAGTTTTAACCCAAAGTCATTGGATTATTTATATGAA
GTCCATAATGTTCGCGTACCTCAGGGACATTTAAGAGTTGGAGGTGCAAATATATTCCAA
AAGGGTGCAACAGACACAGTGTATCCCCCTGCTTCAGTTTTTGTATATTTTTGCTACTTG
GTTTTTCTTGATCATAGCTATTTTGTGCTTGGTCTATGTTGTCTTAAAATGCAGTATCCT
GTACTAGCTTATAATATTCCCATACCAAAGTCATGGGGAAACCAACATTATTTTGTTTTT
GGTTTATTTATACTATATTCTGCATACAGTACTTTAAATGCCAATTACAGTGCAATCTTT
ATTTATTGTAAAATTTTTAAAATGTACTTATGTACTAATTTTCCCTTGTAGCATGTTATT
TTTTTTTGTGTTTTATACTTTTGTAATTTTAGGTCAGTCTTGTTCCTTGGTAACATCTGT
AGTAGTATCATTCTTCTGACATTTTCTTGTGTTTTTAAAGATAAAGAGCATCTAGTGCAT
TAAATGCCAAAAAAAAAAATCCATTATCAGTGATTGAAACGTTTACATGAACCCAAAAAA
AAAATCATCTCTTGAAAGAAAGTGCTAAGATCAATGATTATTCTGTGTGCCTACATTGAT
GTAGTACTAGAAAATTCTGTATTTTCGTCATTGACTATATTAGTTGAATTAGCCTTGCAA
ACTGATGGCATCAAGGTAAACATATATTTGCCAAAGTTCTGGCCTTCCAAAACTCATTCC
TCTCAATGTATAATATGACCCAGTGTAACATTGCATCTGCATTTTCTGAAACAATTTCAT
GCAGGTGTTTTGGGGAGATGGCATTTTTTTAAGCAATGAAGATTCAACTGAGTACAAGAA
CCCCGTTTGCAGGAGGAAAAAAAAAAAAAGCCCCTTTTTGGAAACACTTCAGAACTGCTG
CTATCAAGAAATTCTCTGAATTGGTTTAAATTTTTTAATGAAATATTTTAGACCAAAACC
GCTATGAATATTTTGATCTTTTTGAGATGTTCATACTATCTACTTTGCCCCTGGAAAGCT
GAAGTGTGTGAAACACTAGCTGATGGCACTTTATTTTATTGCTCTCCAATATTCAGTGGT
ATTCATTATAATTTCCTTAGGTCAAAAAAATGGTTCCTCTATCTGGCTCTGTTTTCTATC
ACAAATATGTATATGTGATACTGATATAGAACTATATATATATTGCCATTACACACGAAC
AATAAAATAAAGTGTTATGTTAACCTTCTCTCTTTGCCCTTTTGCAGTATGTAGAAACGA
GTGAATGGCTTTCTGATGCTCTGTATGTCAGACTCCTCCCTGGCACAAGAAATTCCAGTC
ATGTGAAGCAAAATGCTCTTTGTCATCAAATTGTTTAAAAAGAAAACTTTTTAAAAAAAT
TTTTGCATATTAGCTGCCTTGTTCTTATCAACTTGAAACGTTGGCATTTTCTAACCATGT
TTTGTTGGCTACAGTAATTCAGTATTCCTGTCAAAATTGAAAAGTGCCCTAATTGAATGT
GTTTGAATGTTATCCTTGCACAATTCTTTAAATTGAAAGACAAAATGTTTTACCTCACTG
TTGGACATACATTCCAAACTTTTCAACTTTAGGAGAAAAAAAAAAAATAATCATACGTTA
TCCTGTATTGTAAATTTTAGACTATTTCATATACATTGTATTAAAACTGCCATATCAATT
TTAATGTATAGATTTTGCAAATACTATGCTATATGTAATACCTAACTGTATCTGTAGTGT
ATATGTAATATATTTATGCCCAATAAATGTTTTAAATCTTTCTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1902-2035, gnl|bosTau2|chr3 (67587094-67586963)
               

               
               1902-2035, gnl|Hg17|chr3 (173601066-173601181)
               

               
               1902-2035, gnl|Mm7|chr3 (27231993-27231878)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1902-2035, gnl|bosTau2|chr3 (67587094-67586963)
               

               
               1902-2035, gnl|Hg17|chr3 (173601066-173601181)
               

               
               1902-2035, gnl|Mm7|chr3 (27231993-27231878)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               mga (0.480615)
               

               
               fat (0.442282)
               

               
               ova (0.387397)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               mga (0.480615)
               

               
               fat (0.442282)
               

               
               ova (0.387397)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1902-2035, gnl\|bosTau2\|chr3 (67587094-67586963)
	1902-2035, gnl\|Hg17\|chr3 (173601066-173601181)
	1902-2035, gnl\|Mm7\|chr3 (27231993-27231878)

	rec (0.519211)
	mga (0.480615)
	fat (0.442282)
	ova (0.387397)
	bfe (0.299715)
	liv (0.292569)
	lin (0.291206)
	pla (0.267344)
	lyg (0.266205)
	ese (0.253004)
	tra (0.246184)
	hea (0.204499)
	mcp (0.170648)
	eye (0.170503)
	isp (0.150376)
	ski (0.146735)
	nca (0.136874)
	ssp (0.13552)
	kid (0.129735)
	sug (0.127291)
	cty (0.10408)
	eje (0.0988338)