Non-Coding RNA Search

Ss1.1-rsug24_p8.5

Sequence:


               
               CAGCGACTTGATCTCTGCTATGACGAGGGTTCAATCCCTGGCCCGGGAATTTCCACATGC
CCCCGGAAAAAAAAAAAAAAAGATTGGCATCTTTATGGGATGCCAGTGTTTGAACTTAAC
AAACAAACTTTTTTTGCGGGGGGGGGGCGGGGAGGGATAAGAAAATAAAGCACACTCAAG
GTAATTTACAGACCGAGTGACAGTTCTCAGTCTACCTGAGATAAATTCTGGCTGAAGTCA
AGTTTTTGAGAAACATTACAGGGACAAATATCACATTCCAATTACTATTGTATATATTTA
TATGTGCATGTGTTTATTAAATGAAAGCGTTCTAGTTGCTTTTTTTAATATCATGAAGGA
AAAAATTCAACAACCTGAAAAGATGTATTTTTTCACTGTTTATATGGTGTTTCCTATTTG
TATGACTGCTAATCTCTAGCAAGGGGCCTTTCGAACTGTTTCATATCATGAAAGAGACAG
ATCCTTCCCCAGAGTAGGAAGATGGATTGAAAATGCTTGAAGCCAAAGGGACAAGTCAGA
AAATGCAATGCAGCAAGTTGCTCCAAGGACTACCAGATCCTGAATTTTCCTCACAGATGA
AAAGCTTTTTGACTTTCAAAGACAGGACTAAGTATCGGGGATCTAAAAAGAAACAGGCTA
GGATAACTGGACAAGAAGAAAGATGGGAAACGGAATAAAGCAGCTGATCAGCATCTTGGG
AAGCTGAGGGAGGAGGGGCAGGAGGACCAGGAGGAAATACTCCCCAGATTTGCTTGTTTA
AATACAACAAATAAAGTATTCACTACTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGACTTGATCTCTGCTATGACGAGGGTTCAATCCCTGGCCCGGGAATTTCCACATGC
CCCCGGAAAAAAAAAAAAAAAGATTGGCATCTTTATGGGATGCCAGTGTTTGAACTTAAC
AAACAAACTTTTTTTGCGGGGGGGGGGCGGGGAGGGATAAGAAAATAAAGCACACTCAAG
GTAATTTACAGACCGAGTGACAGTTCTCAGTCTACCTGAGATAAATTCTGGCTGAAGTCA
AGTTTTTGAGAAACATTACAGGGACAAATATCACATTCCAATTACTATTGTATATATTTA
TATGTGCATGTGTTTATTAAATGAAAGCGTTCTAGTTGCTTTTTTTAATATCATGAAGGA
AAAAATTCAACAACCTGAAAAGATGTATTTTTTCACTGTTTATATGGTGTTTCCTATTTG
TATGACTGCTAATCTCTAGCAAGGGGCCTTTCGAACTGTTTCATATCATGAAAGAGACAG
ATCCTTCCCCAGAGTAGGAAGATGGATTGAAAATGCTTGAAGCCAAAGGGACAAGTCAGA
AAATGCAATGCAGCAAGTTGCTCCAAGGACTACCAGATCCTGAATTTTCCTCACAGATGA
AAAGCTTTTTGACTTTCAAAGACAGGACTAAGTATCGGGGATCTAAAAAGAAACAGGCTA
GGATAACTGGACAAGAAGAAAGATGGGAAACGGAATAAAGCAGCTGATCAGCATCTTGGG
AAGCTGAGGGAGGAGGGGCAGGAGGACCAGGAGGAAATACTCCCCAGATTTGCTTGTTTA
AATACAACAAATAAAGTATTCACTACTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               158-806, gnl|bosTau2|chr1 (75413931-75414568)
               

               
               158-806, gnl|Hg17|chr3 (150570130-150569509)
               

               
               158-806, gnl|Mm7|chr3 (57414642-57414064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-806, gnl|bosTau2|chr1 (75413931-75414568)
               

               
               158-806, gnl|Hg17|chr3 (150570130-150569509)
               

               
               158-806, gnl|Mm7|chr3 (57414642-57414064)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               gul (1.42071)
               

               
               sug (1.01833)
               

               
               tra (0.984737)
               

               
               cmu (0.931966)
               

               
               aor (0.781097)
               

               
               ski (0.586941)
               

               
               cte (0.58548)
               

               
               csk (0.562984)
               

               
               sto (0.539471)
               

               
               mgp (0.461361)
               

               
               clu (0.358938)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.42071)
               

               
               sug (1.01833)
               

               
               tra (0.984737)
               

               
               cmu (0.931966)
               

               
               aor (0.781097)
               

               
               ski (0.586941)
               

               
               cte (0.58548)
               

               
               csk (0.562984)
               

               
               sto (0.539471)
               

               
               mgp (0.461361)
               

               
               clu (0.358938)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	158-806, gnl\|bosTau2\|chr1 (75413931-75414568)
	158-806, gnl\|Hg17\|chr3 (150570130-150569509)
	158-806, gnl\|Mm7\|chr3 (57414642-57414064)

	gul (1.42071)
	sug (1.01833)
	tra (0.984737)
	cmu (0.931966)
	aor (0.781097)
	ski (0.586941)
	cte (0.58548)
	csk (0.562984)
	sto (0.539471)
	mgp (0.461361)
	clu (0.358938)
	spc (0.340097)
	sme (0.305437)
	ldo (0.291008)
	pla (0.267344)
	ute (0.265569)
	ova (0.258264)
	bla (0.248694)
	cbe (0.239234)
	nms (0.213858)
	hea (0.204499)
	eje (0.197668)
	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	tbr (0.154178)
	bfe (0.149858)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	lyg (0.133103)
	med (0.116252)
	jca (0.11396)