Non-Coding RNA Search

Ss1.1-rsug25_m10.5

Sequence:


               
               TGCTGAGGAAGAAAATGTAGTTTTCAAATAGTGAGGAATGAAATTATTGAATTAAATATC
TTTTTAAGTAAAACCAGAATGTACCATCTTCTTTTTCTTTCAGCTTAATACTTTTGGAAA
TGTCAGCCTAATGGAGTTTAAAATATTTTAATACTGGTCAAAATAGTAGCTTTATAATTA
AACATTGAATAGGCAAAAGAATTTTCTGTAAGTTGCTGATCATTGGTCAGAATGCTGCTC
TGTTGAATTACATTGTGCAGCATAAACCTGAGGCGATTTATTAGGAAGTGTGGAGCTGCC
CTTCTCACCCAGGGCTTCTAAGGAATTGCTACAAGGATTTGTTAAAATGCTTCATAAGTT
TTCATGATTTTCTGTATTTCTGTTAAACTCAGCTATTGTTAATGCCAGAATCTCCTACTA
TGAATAAGTGCTTGGATTTATTTAAACCTAGTGAAAAAAAGTTCTATCTCCTGGGGGGAT
TAGGAGAGGGGAAGAATAGACATTTAAGTTATTAAAAAAAATGTGCAATGTTCTAAATAA
TAGCAAATACTAGCTGAGGTACTTTTCATGGTTTGGTCATTCAGCTTAAATTTGAACTTG
GCTTATTTTACATGTTGTTGATGTACATTATTTCTGATTGTTTTATATGGTTTAAAAGTT
CTGCCTTTAAAGAAATTCAGAGAATTCGCCTGATACAAATATAAATTTCTTAGGAGGTCA
AAGTATGTGTATCAGTATTGAAATATAAAAAGTCCAGTGCTCCAATATAAGGAAGTTACT
GTTTTGAAATAAAGCAAACTTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGAGGAAGAAAATGTAGTTTTCAAATAGTGAGGAATGAAATTATTGAATTAAATATC
TTTTTAAGTAAAACCAGAATGTACCATCTTCTTTTTCTTTCAGCTTAATACTTTTGGAAA
TGTCAGCCTAATGGAGTTTAAAATATTTTAATACTGGTCAAAATAGTAGCTTTATAATTA
AACATTGAATAGGCAAAAGAATTTTCTGTAAGTTGCTGATCATTGGTCAGAATGCTGCTC
TGTTGAATTACATTGTGCAGCATAAACCTGAGGCGATTTATTAGGAAGTGTGGAGCTGCC
CTTCTCACCCAGGGCTTCTAAGGAATTGCTACAAGGATTTGTTAAAATGCTTCATAAGTT
TTCATGATTTTCTGTATTTCTGTTAAACTCAGCTATTGTTAATGCCAGAATCTCCTACTA
TGAATAAGTGCTTGGATTTATTTAAACCTAGTGAAAAAAAGTTCTATCTCCTGGGGGGAT
TAGGAGAGGGGAAGAATAGACATTTAAGTTATTAAAAAAAATGTGCAATGTTCTAAATAA
TAGCAAATACTAGCTGAGGTACTTTTCATGGTTTGGTCATTCAGCTTAAATTTGAACTTG
GCTTATTTTACATGTTGTTGATGTACATTATTTCTGATTGTTTTATATGGTTTAAAAGTT
CTGCCTTTAAAGAAATTCAGAGAATTCGCCTGATACAAATATAAATTTCTTAGGAGGTCA
AAGTATGTGTATCAGTATTGAAATATAAAAAGTCCAGTGCTCCAATATAAGGAAGTTACT
GTTTTGAAATAAAGCAAACTTACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-804, gnl|bosTau2|chr18 (65133-64307)
               

               
               3-804, gnl|Hg17|chr8 (66784522-66785341)
               

               
               3-804, gnl|Mm7|chr3 (18951655-18952814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-804, gnl|bosTau2|chr18 (65133-64307)
               

               
               3-804, gnl|Hg17|chr8 (66784522-66785341)
               

               
               3-804, gnl|Mm7|chr3 (18951655-18952814)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sug (0.509165)
               

               
               nje (0.33184)
               

               
               ste (0.270416)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.509165)
               

               
               nje (0.33184)
               

               
               ste (0.270416)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	3-804, gnl\|bosTau2\|chr18 (65133-64307)
	3-804, gnl\|Hg17\|chr8 (66784522-66785341)
	3-804, gnl\|Mm7\|chr3 (18951655-18952814)

	sug (0.509165)
	nje (0.33184)
	ste (0.270416)
	nms (0.213858)
	tes (0.207814)
	gul (0.177588)
	fbs (0.175346)
	mga (0.160205)
	ski (0.146735)
	lyg (0.133103)
	bla (0.124347)
	spc (0.113366)
	jej (0.0989218)