Non-Coding RNA Search

Ss1.1-rsug25_n2.5

Sequence:


               
               AGCCTTCATTAAATAATAGGTACCAAAGTGTTCAGAATATGTATTTTAGACAAATCATAC
TTGATTGAAAACTTTCCCCTTATTTTGGGAACATAGTATATGTCCCAGTTAACTGAATTG
GGTAGATTTGTAAAGTATTCCTTATTATATATACAGAAAGGGTAGTTAGAACACAGAACT
TTGATTTTGGTATAGATGAAGAGGGAGTAATGAGTAAATTTCCTAGGTTTATGTGAAATT
AGGAGGTGTACGCTTTCTGAAGCAATCTAATACAGAGATGGTGCTGAAATCTGTTACCAA
GGCATTCTCTAGTTGTTTAGCATCATGTCATTAAAACTTTCACACAAGGAGTGTTTCTCT
GGCAGATTTTAAGGTTACTACTAAATTCATTTCAATTCATTACTGAAATGAAATATACAA
AAATTAATGATCTCTTAGAAAAGGGTAGAAAAGGATGAGAACTGGGTTGAAAGAAGAGAC
AAAGTAACTTGTACTGGAAAGAAAAGATATAGGGTACTTCTCTTTTCTGTTTAAACTTTA
TCTTCTTGGTAAGATTTCTTGAGGAGACAGTGGTTTCTTACCTTGTAATGCCAGGATGAA
TTTAATTCTTGCCAGCCCTTGGGTGTGCTCAGTAGCAGGGCCTTTCTAATGGGTTCTTCC
TCTTTGTCTTATTAAAGTACAAGCAGCATTTGACCAATTTCCAATGCTCTTGGCATTTTA
AAGAACAACCGCTAAAAAAAAAACTTTATAATTTTATTATCTTTTGCTTCATAAAATGCT
GAAGAATTTATTTTAAAGAAAACGCCTACCTCATTAGCTAGTCAAGATGCTGTGATGGTC
AACCTATCCTACCTAATGTGTTTAGGAAAAAAGAATGAGCAAGAAAAGTATGTACGTCCT
GGCTTGGCTATTGAGGGAAAAAAGAGGAAGAGTTGAGTATTAATTATTTAAGTATTCCTG
ATGGTGGGAGTATGTTGGAAGAGTACTGTAAAAGTTTGAATTTTTTAAAAAGCGCTAATA
TTTAGGTATCTCTCCTGAAGTTCTTTGCAACTCACTTTTTATGGAAATTAACCCAGTGAA
ACACTCAAAAGTTTTTGCTTTTTTTTTTTTTTTAAGTGGTGTTTTTCCAGATAAACTCTA
GGGGTAAACATTCACATAGTAACAAAAATGTAATTCTGTAATTGTGTAATACCTGTCTGC
TTTGTTTGGTACATCTTCCATGGAGATGTCAATGAATATAATACTGCATCTGTGAATATT
TTAAATGTTGAAATAAAAATAAGAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTCATTAAATAATAGGTACCAAAGTGTTCAGAATATGTATTTTAGACAAATCATAC
TTGATTGAAAACTTTCCCCTTATTTTGGGAACATAGTATATGTCCCAGTTAACTGAATTG
GGTAGATTTGTAAAGTATTCCTTATTATATATACAGAAAGGGTAGTTAGAACACAGAACT
TTGATTTTGGTATAGATGAAGAGGGAGTAATGAGTAAATTTCCTAGGTTTATGTGAAATT
AGGAGGTGTACGCTTTCTGAAGCAATCTAATACAGAGATGGTGCTGAAATCTGTTACCAA
GGCATTCTCTAGTTGTTTAGCATCATGTCATTAAAACTTTCACACAAGGAGTGTTTCTCT
GGCAGATTTTAAGGTTACTACTAAATTCATTTCAATTCATTACTGAAATGAAATATACAA
AAATTAATGATCTCTTAGAAAAGGGTAGAAAAGGATGAGAACTGGGTTGAAAGAAGAGAC
AAAGTAACTTGTACTGGAAAGAAAAGATATAGGGTACTTCTCTTTTCTGTTTAAACTTTA
TCTTCTTGGTAAGATTTCTTGAGGAGACAGTGGTTTCTTACCTTGTAATGCCAGGATGAA
TTTAATTCTTGCCAGCCCTTGGGTGTGCTCAGTAGCAGGGCCTTTCTAATGGGTTCTTCC
TCTTTGTCTTATTAAAGTACAAGCAGCATTTGACCAATTTCCAATGCTCTTGGCATTTTA
AAGAACAACCGCTAAAAAAAAAACTTTATAATTTTATTATCTTTTGCTTCATAAAATGCT
GAAGAATTTATTTTAAAGAAAACGCCTACCTCATTAGCTAGTCAAGATGCTGTGATGGTC
AACCTATCCTACCTAATGTGTTTAGGAAAAAAGAATGAGCAAGAAAAGTATGTACGTCCT
GGCTTGGCTATTGAGGGAAAAAAGAGGAAGAGTTGAGTATTAATTATTTAAGTATTCCTG
ATGGTGGGAGTATGTTGGAAGAGTACTGTAAAAGTTTGAATTTTTTAAAAAGCGCTAATA
TTTAGGTATCTCTCCTGAAGTTCTTTGCAACTCACTTTTTATGGAAATTAACCCAGTGAA
ACACTCAAAAGTTTTTGCTTTTTTTTTTTTTTTAAGTGGTGTTTTTCCAGATAAACTCTA
GGGGTAAACATTCACATAGTAACAAAAATGTAATTCTGTAATTGTGTAATACCTGTCTGC
TTTGTTTGGTACATCTTCCATGGAGATGTCAATGAATATAATACTGCATCTGTGAATATT
TTAAATGTTGAAATAAAAATAAGAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1290, gnl|bosTau2|chr20 (26547723-26549006)
               

               
               1-1290, gnl|Hg17|chr5 (32638592-32639942)
               

               
               1-1290, gnl|Mm7|chr15 (12042922-12041429)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1290, gnl|bosTau2|chr20 (26547723-26549006)
               

               
               1-1290, gnl|Hg17|chr5 (32638592-32639942)
               

               
               1-1290, gnl|Mm7|chr15 (12042922-12041429)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-1290, gnl\|bosTau2\|chr20 (26547723-26549006)
	1-1290, gnl\|Hg17\|chr5 (32638592-32639942)
	1-1290, gnl\|Mm7\|chr15 (12042922-12041429)

	amn (0.417711)
	tbr (0.308356)
	kid (0.259471)
	sug (0.254582)
	cbe (0.239234)
	spc (0.226732)
	cmu (0.186393)
	gul (0.177588)
	fty (0.17584)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)