Ss1.1-rsug26_a2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTCTCTAGAGGTGGTATTTATCAGAATGTGCCGTGCCTTTGACTCTCAGAACAATACC GTGTACTTTGATGGCAAATATGCTAGCCCCGATGTCTTCAAATCCTTAGGTTGTGAAGAC TTTATTAGCTTTGTATTTGAATTTGGAAAGAGTTTATGTTCTATGCACCTGACTGAAGAT GAAATTGCATTATTTTCTGCATTTGTCCTGATGTCAGCAGATCGCTCATGGCTGCAGGAA AAGGTAAAAATTGAAAAACTGCAACAGAAAATTCAGCTAGCTCTTCAGCACGTCCTACAG AAGAATCATCGAGAAGATGGAATACTAACAAAGTTAATATGCAAGGTGTCTACATTAAGA GCCTTATGTGGACGACATACAGAAAAGCTAATGGCGTTTAAAGCAATATACCCAGACATT GTGCGACTTCATTTTCCTCCATTATACAAGGAGTTGTTCACTTCAGAATTTGAGCCAGCC ATGCAGATCGATGGGTAAATGTATCACCTAAGCACTTCTAGAATGTCTGAAGTCCAAACA ATGAAGAACAAACAAACGAACAAATTAACCAAGACACTTTATATGGCCCTGCACAGACCT GGAGCGCCAACACACTGCACATCCTTTGGTGATCGGGGTCAGGCAAAGGAGGGGAAACAA AGAAGACAAATAAAAGTTGAACTTGTTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTCTCTAGAGGTGGTATTTATCAGAATGTGCCGTGCCTTTGACTCTCAGAACAATACC GTGTACTTTGATGGCAAATATGCTAGCCCCGATGTCTTCAAATCCTTAGGTTGTGAAGAC TTTATTAGCTTTGTATTTGAATTTGGAAAGAGTTTATGTTCTATGCACCTGACTGAAGAT GAAATTGCATTATTTTCTGCATTTGTCCTGATGTCAGCAGATCGCTCATGGCTGCAGGAA AAGGTAAAAATTGAAAAACTGCAACAGAAAATTCAGCTAGCTCTTCAGCACGTCCTACAG AAGAATCATCGAGAAGATGGAATACTAACAAAGTTAATATGCAAGGTGTCTACATTAAGA GCCTTATGTGGACGACATACAGAAAAGCTAATGGCGTTTAAAGCAATATACCCAGACATT GTGCGACTTCATTTTCCTCCATTATACAAGGAGTTGTTCACTTCAGAATTTGAGCCAGCC ATGCAGATCGATGGGTAAATGTATCACCTAAGCACTTCTAGAATGTCTGAAGTCCAAACA ATGAAGAACAAACAAACGAACAAATTAACCAAGACACTTTATATGGCCCTGCACAGACCT GGAGCGCCAACACACTGCACATCCTTTGGTGATCGGGGTCAGGCAAAGGAGGGGAAACAA AGAAGACAAATAAAAGTTGAACTTGTTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 451-548, - strand, RNAz p=0.693684 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 451-548, - strand, RNAz p=0.693684 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 108-220, gnl|bosTau2|chr10 (36881959-36882071) | |
| 108-220, gnl|canFam2|chr30 (28320545-28320717) | |
| 108-220, gnl|danRer3|chr25 (27084179-27084040) | |
| 108-220, gnl|dasNov1|scaffold_1786 (39518-39348) | |
| 108-220, gnl|echTel1|scaffold_311229 (11338-11165) | |
| 108-220, gnl|fr1|chrUn (78922312-78922473) | |
| 108-220, gnl|galGal2|chr10 (5814642-5814446) | |
| 108-220, gnl|hg17|chr15 (58580441-58580618) | |
| 108-220, gnl|Hg17|chr15 (58580562-58580450) | |
| 108-220, gnl|mm7|chr9 (69407622-69407448) | |
| 108-220, gnl|Mm7|chr9 (69407499-69407611) | |
| 108-220, gnl|monDom2|scaffold_12 (54095625-54095453) | |
| 108-220, gnl|oryCun1|scaffold_205746 (4743-4566) | |
| 108-220, gnl|panTro1|chr16 (59005252-59005429) | |
| 108-220, gnl|rheMac2|chr7 (38920561-38920738) | |
| 108-220, gnl|rn3|chr8 (73833173-73833001) | |
| 108-220, gnl|tetNig1|chr13 (7118932-7118780) | |
| 108-220, gnl|xenTro1|scaffold_287 (797312-797460) | |
| 332-687, gnl|bosTau2|chr10 (36884693-36885048) | |
| 332-687, gnl|Hg17|chr15 (58577112-58576762) | |
| 332-687, gnl|Mm7|chr9 (69410911-69411305) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 108-220, gnl|bosTau2|chr10 (36881959-36882071) | |
| 108-220, gnl|canFam2|chr30 (28320545-28320717) | |
| 108-220, gnl|danRer3|chr25 (27084179-27084040) | |
| 108-220, gnl|dasNov1|scaffold_1786 (39518-39348) | |
| 108-220, gnl|echTel1|scaffold_311229 (11338-11165) | |
| 108-220, gnl|fr1|chrUn (78922312-78922473) | |
| 108-220, gnl|galGal2|chr10 (5814642-5814446) | |
| 108-220, gnl|hg17|chr15 (58580441-58580618) | |
| 108-220, gnl|Hg17|chr15 (58580562-58580450) | |
| 108-220, gnl|mm7|chr9 (69407622-69407448) | |
| 108-220, gnl|Mm7|chr9 (69407499-69407611) | |
| 108-220, gnl|monDom2|scaffold_12 (54095625-54095453) | |
| 108-220, gnl|oryCun1|scaffold_205746 (4743-4566) | |
| 108-220, gnl|panTro1|chr16 (59005252-59005429) | |
| 108-220, gnl|rheMac2|chr7 (38920561-38920738) | |
| 108-220, gnl|rn3|chr8 (73833173-73833001) | |
| 108-220, gnl|tetNig1|chr13 (7118932-7118780) | |
| 108-220, gnl|xenTro1|scaffold_287 (797312-797460) | |
| 332-687, gnl|bosTau2|chr10 (36884693-36885048) | |
| 332-687, gnl|Hg17|chr15 (58577112-58576762) | |
| 332-687, gnl|Mm7|chr9 (69410911-69411305) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) |