Ss1.1-rsug26_p8.5.5
|
AACGTGGGTCGAACTCCCGGACACAACGTTGCCGGAGTCTTAGCTCTTCAAAATTCTGGG
TCTAGATAGAGAAGGGTCTGAGGAAGGAGAAGGATCGCTTTTCTGGTGCTGGAGCTCTTT
GGGAGAGCGGATGGCGAGCGATTGCAGCTGGAGCTGTGCCGGGCTCGAGGAGCGCCATGG
TGGCGTCCTGCCGCCAAGCCAGGATAGAGACGGCGCTGCTGCCCTATTGGCGGCGTGTAG
GTCGGCCTCCTTGCTCTGAGAGAGCGAACGGCTGCGGAGCCGCTTTCCCCCGGGCTTCTT
TTCGCTAGGCCTAAAAAATGTGTCCTGTTTTTAGTACTCTTTTTCGTGGCGCCTCGGAGG
CGGTCGGCCGCTTGAGGATGAAGTTGAACATCTCTTTCCCGGCCACTGGCTGCCAAAAAC
TCATTGAAGTGGACGATGAGCGAAAACTTCGTACATTTTATGAGAAACGCATGGCCACAG
AAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTGGTG
GGAACGACAAACAAGGATTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGAGTCCGCC
TGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGGACTGGAGAAAGAAAGCGCA
AATCAGTTCGGGGTTGCATTGTGGATGCCAATCTAAGTGTTCTCAATTTGGTCATCGTAA
AAAAAGGGGAGAAGGATATTCCTGGACTCACCGATACCACTGTGCCTCGCCGCCTGGGGC
CTAAAAGAGCTAGCAGGATCCGCAAACTTTTCAATCTCTCTAAGGAAGACGATGTCCGTC
AGTATGTAGTGAGAAAGCCCCTAAACAAAGAAGGAAAGAAACCTAGGACCAAAGCACCCA
AGATTCAGCGTCTTGTTACTCCACGTGTTCTGCAACACAAACGTCGCCGTATTGCTCTGA
AGAAACAACGTACCAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCA
AGAGAATGAAGGAGGCCAAAGAAAAACGTCAGGAACAGATTGCCAAGAGACGGAGGCTAT
CCTCTCTGAGAGCATCTACCTCTAAGTCTGAGTCCAGTCAAAAATGAGATGTTTTGAGAA
TAACCAATAAATAACATCAAATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACGTGGGTCGAACTCCCGGACACAACGTTGCCGGAGTCTTAGCTCTTCAAAATTCTGGG
TCTAGATAGAGAAGGGTCTGAGGAAGGAGAAGGATCGCTTTTCTGGTGCTGGAGCTCTTT
GGGAGAGCGGATGGCGAGCGATTGCAGCTGGAGCTGTGCCGGGCTCGAGGAGCGCCATGG
TGGCGTCCTGCCGCCAAGCCAGGATAGAGACGGCGCTGCTGCCCTATTGGCGGCGTGTAG
GTCGGCCTCCTTGCTCTGAGAGAGCGAACGGCTGCGGAGCCGCTTTCCCCCGGGCTTCTT
TTCGCTAGGCCTAAAAAATGTGTCCTGTTTTTAGTACTCTTTTTCGTGGCGCCTCGGAGG
CGGTCGGCCGCTTGAGGATGAAGTTGAACATCTCTTTCCCGGCCACTGGCTGCCAAAAAC
TCATTGAAGTGGACGATGAGCGAAAACTTCGTACATTTTATGAGAAACGCATGGCCACAG
AAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTGGTG
GGAACGACAAACAAGGATTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGAGTCCGCC
TGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGGACTGGAGAAAGAAAGCGCA
AATCAGTTCGGGGTTGCATTGTGGATGCCAATCTAAGTGTTCTCAATTTGGTCATCGTAA
AAAAAGGGGAGAAGGATATTCCTGGACTCACCGATACCACTGTGCCTCGCCGCCTGGGGC
CTAAAAGAGCTAGCAGGATCCGCAAACTTTTCAATCTCTCTAAGGAAGACGATGTCCGTC
AGTATGTAGTGAGAAAGCCCCTAAACAAAGAAGGAAAGAAACCTAGGACCAAAGCACCCA
AGATTCAGCGTCTTGTTACTCCACGTGTTCTGCAACACAAACGTCGCCGTATTGCTCTGA
AGAAACAACGTACCAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCA
AGAGAATGAAGGAGGCCAAAGAAAAACGTCAGGAACAGATTGCCAAGAGACGGAGGCTAT
CCTCTCTGAGAGCATCTACCTCTAAGTCTGAGTCCAGTCAAAAATGAGATGTTTTGAGAA
TAACCAATAAATAACATCAAATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cmu (9.31966) |
|
sto (8.27189) |
|
csk (8.02252) |
|
tbr (8.01727) |
|
cte (5.8548) |
|
mgp (5.76701) |
|
ldo (5.72315) |
|
bla (5.47128) |
|
cut (5.43755) |
|
cst (5.32138) |
|
sag (5.11602) |
|
cje (4.95704) |
|
eje (4.84285) |
|
thg (4.81806) |
|
ova (4.51963) |
|
ste (4.46187) |
|
cki (4.46134) |
|
sug (4.45519) |
|
spl (4.43872) |
|
mcp (4.26621) |
|
lyg (4.12618) |
|
med (4.06882) |
|
nlu (4.0253) |
|
aor (3.90549) |
|
eep (3.67692) |
|
ssp (3.52351) |
|
bfe (3.44673) |
|
nep (3.31065) |
|
fat (3.2434) |
|
nco (3.23468) |
|
sin (3.14906) |
|
che (3.13522) |
|
col (3.12012) |
|
rec (3.11526) |
|
elu (3.08285) |
|
pgl (3.08057) |
|
ese (3.03605) |
|
isp (3.00752) |
|
ski (2.9347) |
|
hea (2.86299) |
|
eru (2.7611) |
|
ecc (2.64581) |
|
cbe (2.63158) |
|
lnt (2.56155) |
|
amn (2.50627) |
|
nje (2.4888) |
|
fty (2.46175) |
|
ill (2.4583) |
|
fli (2.43457) |
|
pan (2.3596) |
|
kid (2.33524) |
|
vin (2.3279) |
|
eye (2.21654) |
|
nca (2.18998) |
|
jca (2.16524) |
|
spc (2.15395) |
|
sme (2.13806) |
|
tra (2.09257) |
|
ece (2.06375) |
|
nms (1.92472) |
|
duo (1.90081) |
|
lin (1.89284) |
|
nbm (1.88717) |
|
pty (1.85529) |
|
hlv (1.81033) |
|
gul (1.77588) |
|
csp (1.77305) |
|
nmm (1.72643) |
|
mas (1.68244) |
|
ret (1.67353) |
|
fce (1.62955) |
|
jej (1.58275) |
|
tes (1.4547) |
|
ebs (1.41961) |
|
lun (1.3544) |
|
ton (1.053) |
|
liv (1.02399) |
|
hyp (0.999857) |
|
mgm (0.901713) |
|
cly (0.844493) |
|
mga (0.64082) |
|
fcc (0.593354) |
|
ute (0.531138) |
|
pro (0.512033) |
|
fhi (0.508733) |
|
cli (0.458435) |
|
eli (0.455443) |
|
cag (0.453583) |
|
clu (0.358938) |
|
fbs (0.350693) |
|
cga (0.279096) |
|
cov (0.264306) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
cmu (9.31966) |
|
sto (8.27189) |
|
csk (8.02252) |
|
tbr (8.01727) |
|
cte (5.8548) |
|
mgp (5.76701) |
|
ldo (5.72315) |
|
bla (5.47128) |
|
cut (5.43755) |
|
cst (5.32138) |
|
sag (5.11602) |
|
cje (4.95704) |
|
eje (4.84285) |
|
thg (4.81806) |
|
ova (4.51963) |
|
ste (4.46187) |
|
cki (4.46134) |
|
sug (4.45519) |
|
spl (4.43872) |
|
mcp (4.26621) |
|
lyg (4.12618) |
|
med (4.06882) |
|
nlu (4.0253) |
|
aor (3.90549) |
|
eep (3.67692) |
|
ssp (3.52351) |
|
bfe (3.44673) |
|
nep (3.31065) |
|
fat (3.2434) |
|
nco (3.23468) |
|
sin (3.14906) |
|
che (3.13522) |
|
col (3.12012) |
|
rec (3.11526) |
|
elu (3.08285) |
|
pgl (3.08057) |
|
ese (3.03605) |
|
isp (3.00752) |
|
ski (2.9347) |
|
hea (2.86299) |
|
eru (2.7611) |
|
ecc (2.64581) |
|
cbe (2.63158) |
|
lnt (2.56155) |
|
amn (2.50627) |
|
nje (2.4888) |
|
fty (2.46175) |
|
ill (2.4583) |
|
fli (2.43457) |
|
pan (2.3596) |
|
kid (2.33524) |
|
vin (2.3279) |
|
eye (2.21654) |
|
nca (2.18998) |
|
jca (2.16524) |
|
spc (2.15395) |
|
sme (2.13806) |
|
tra (2.09257) |
|
ece (2.06375) |
|
nms (1.92472) |
|
duo (1.90081) |
|
lin (1.89284) |
|
nbm (1.88717) |
|
pty (1.85529) |
|
hlv (1.81033) |
|
gul (1.77588) |
|
csp (1.77305) |
|
nmm (1.72643) |
|
mas (1.68244) |
|
ret (1.67353) |
|
fce (1.62955) |
|
jej (1.58275) |
|
tes (1.4547) |
|
ebs (1.41961) |
|
lun (1.3544) |
|
ton (1.053) |
|
liv (1.02399) |
|
hyp (0.999857) |
|
mgm (0.901713) |
|
cly (0.844493) |
|
mga (0.64082) |
|
fcc (0.593354) |
|
ute (0.531138) |
|
pro (0.512033) |
|
fhi (0.508733) |
|
cli (0.458435) |
|
eli (0.455443) |
|
cag (0.453583) |
|
clu (0.358938) |
|
fbs (0.350693) |
|
cga (0.279096) |
|
cov (0.264306) |
|
fco (0.157208) |
|
ctl (0.153069) |
