Non-Coding RNA Search

Ss1.1-rsug27_b8.5

Sequence:


               
               TGCCTGGGGCCGAGGGACAGGCAGGACCACCTGCTTCTCTGGCGGAGAGGCCAGTCGACA
CAGTTCCTAGAAGCAGCCATTGCTGTCTTTTTACACTGTATGCGGTTTGGAAGTGAATGT
AAAGACATACTGTGGGCATTTACCTCTCTGTGCCAGCTTGGCTTCTGTCGCCTGGACCTC
ATGCTGACCTGGGGCAGGGTGGGGACGGAATCTGTGTGCGGAGAGACACGAGGCCACCAC
TGACACGGGTGATGGGTGGTCATGGGAGAGGCTTGGCGCCTTCTCAGAAGAAATCATGTC
TGAGGGTGAATGTGTGACGTGATCACGCCAGAGCGGGGAAGATCCAAGCCGGGAAGATGG
GCTTGACGCAAACTGCATTATCAAGAGTACCTTGGTGAGAGGATCAGCGTAAATCCTAAT
AGGTACAAAGACTTTGTGTTTTTGCTTTGTCACAGATTTATCGAGAAACTTTTTGCTTCT
GCTTCTGTTCTTAGCATTTTGTTTCTGGTTTTCATTTTTGAAGCCCCAATGCCTTTTAAA
CTCGTGGTTTTTTTTCCTCTCTCCCTCTCGGTCTCCAATTGCCCACCCCACTCTGCACTA
TCCAGTCCTAAAACATTTTTAAAGCCCTGTTCCTGACATTGGAAATACATTTAGGCAGGG
GAAGCAGTTTCTGACTTGGTGTTAACGGGTTTCATTATGAAGAATTGAAATTATTCATGG
AACACTAGACATCACAAATCAAACACTATATTGTACCATCAAAATTCCTCTCACTTCTTC
TCAAATATTGAGCTTTAGTACAATCATGGGTAACATTCTAGTGATTATTTAGGGACTTTT
TTATACACCACACAATAGCTTTTTTCTATAAAGAGTGCCTCTTTCACAAAACCAAATGCT
TGTCGGCCAGTACACTTTTCAAAGGGAATCCACTGTTTTTGCAATTTTTTCTACTACTTC
TCTTCCCTTCACCCAAAGCCTTCCCAAAAATCATCAAGCAAGCATTTGAGGCCTGTGGTG
TACTAGACAGTTTTCTTCTCAAACTTTGATTCCATTTTAATTATACACCTCTGTCCATTT
ACCCTGTGTCTTGGATTTGAATGTATTATTTGATTCTTACCTTTGTTCAGGCAGAAATAG
GAATAATATTGAGTTGAAAATCTCTCCCAGAAGACAAACTACTTAAGTGAGTAAAGGCTT
TGGCATTGTTTTATTCATAAAGGGGGTTATTTGAGCTGAGAAAGTACTGTCTCTAAATGT
TTCCATCTTCAGTTTGAAATCTGTAACTTGTATAGACCCTAAAGCAGGAGAGCTTTCCTT
TCTGTCATTTTCCCTTTGCTTTTGTATGACCACATGTTTTCTGTACCAGTCACTTGGGAA
AGAAGTGAGCTTATCTCTCAATTGTTTTAGAGTTTTGCTTGTCTATTTAGCATTCCTTTT
TGAGTCTCAAGATTTATGGAACAATAAATGTCATTTAATGCTGTGTGCTATTTTGAATTC
CTCATCAGGTTTTAGAAGTGGGGTAAGAATAATTAAAAGCTCATCAAACTTGAAATTACA
CCAAGCGGCATTTGAACATTAGTTGTCCCAGTGAAAAAGGTTAAATTATGGCACCAGCAA
ATTTGCTACTTTTGTTTTTTTAATAGTAGGATGTACACATTTCAGTATAATAAATGTTTT
CCGATTGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTGGGGCCGAGGGACAGGCAGGACCACCTGCTTCTCTGGCGGAGAGGCCAGTCGACA
CAGTTCCTAGAAGCAGCCATTGCTGTCTTTTTACACTGTATGCGGTTTGGAAGTGAATGT
AAAGACATACTGTGGGCATTTACCTCTCTGTGCCAGCTTGGCTTCTGTCGCCTGGACCTC
ATGCTGACCTGGGGCAGGGTGGGGACGGAATCTGTGTGCGGAGAGACACGAGGCCACCAC
TGACACGGGTGATGGGTGGTCATGGGAGAGGCTTGGCGCCTTCTCAGAAGAAATCATGTC
TGAGGGTGAATGTGTGACGTGATCACGCCAGAGCGGGGAAGATCCAAGCCGGGAAGATGG
GCTTGACGCAAACTGCATTATCAAGAGTACCTTGGTGAGAGGATCAGCGTAAATCCTAAT
AGGTACAAAGACTTTGTGTTTTTGCTTTGTCACAGATTTATCGAGAAACTTTTTGCTTCT
GCTTCTGTTCTTAGCATTTTGTTTCTGGTTTTCATTTTTGAAGCCCCAATGCCTTTTAAA
CTCGTGGTTTTTTTTCCTCTCTCCCTCTCGGTCTCCAATTGCCCACCCCACTCTGCACTA
TCCAGTCCTAAAACATTTTTAAAGCCCTGTTCCTGACATTGGAAATACATTTAGGCAGGG
GAAGCAGTTTCTGACTTGGTGTTAACGGGTTTCATTATGAAGAATTGAAATTATTCATGG
AACACTAGACATCACAAATCAAACACTATATTGTACCATCAAAATTCCTCTCACTTCTTC
TCAAATATTGAGCTTTAGTACAATCATGGGTAACATTCTAGTGATTATTTAGGGACTTTT
TTATACACCACACAATAGCTTTTTTCTATAAAGAGTGCCTCTTTCACAAAACCAAATGCT
TGTCGGCCAGTACACTTTTCAAAGGGAATCCACTGTTTTTGCAATTTTTTCTACTACTTC
TCTTCCCTTCACCCAAAGCCTTCCCAAAAATCATCAAGCAAGCATTTGAGGCCTGTGGTG
TACTAGACAGTTTTCTTCTCAAACTTTGATTCCATTTTAATTATACACCTCTGTCCATTT
ACCCTGTGTCTTGGATTTGAATGTATTATTTGATTCTTACCTTTGTTCAGGCAGAAATAG
GAATAATATTGAGTTGAAAATCTCTCCCAGAAGACAAACTACTTAAGTGAGTAAAGGCTT
TGGCATTGTTTTATTCATAAAGGGGGTTATTTGAGCTGAGAAAGTACTGTCTCTAAATGT
TTCCATCTTCAGTTTGAAATCTGTAACTTGTATAGACCCTAAAGCAGGAGAGCTTTCCTT
TCTGTCATTTTCCCTTTGCTTTTGTATGACCACATGTTTTCTGTACCAGTCACTTGGGAA
AGAAGTGAGCTTATCTCTCAATTGTTTTAGAGTTTTGCTTGTCTATTTAGCATTCCTTTT
TGAGTCTCAAGATTTATGGAACAATAAATGTCATTTAATGCTGTGTGCTATTTTGAATTC
CTCATCAGGTTTTAGAAGTGGGGTAAGAATAATTAAAAGCTCATCAAACTTGAAATTACA
CCAAGCGGCATTTGAACATTAGTTGTCCCAGTGAAAAAGGTTAAATTATGGCACCAGCAA
ATTTGCTACTTTTGTTTTTTTAATAGTAGGATGTACACATTTCAGTATAATAAATGTTTT
CCGATTGTTTTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1212-1483, gnl|bosTau2|chr5 (52629159-52628886)
               

               
               1212-1483, gnl|Hg17|chr3 (33405318-33405049)
               

               
               1212-1483, gnl|Mm7|chr9 (113681893-113682167)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1212-1483, gnl|bosTau2|chr5 (52629159-52628886)
               

               
               1212-1483, gnl|Hg17|chr3 (33405318-33405049)
               

               
               1212-1483, gnl|Mm7|chr9 (113681893-113682167)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               thg (0.633955)
               

               
               spl (0.429553)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               spl (0.429553)
               

               
               kid (0.389206)
               

               
               bla (0.373042)
               

               
               tra (0.369276)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	1212-1483, gnl\|bosTau2\|chr5 (52629159-52628886)
	1212-1483, gnl\|Hg17\|chr3 (33405318-33405049)
	1212-1483, gnl\|Mm7\|chr9 (113681893-113682167)

	thg (0.633955)
	spl (0.429553)
	kid (0.389206)
	bla (0.373042)
	tra (0.369276)
	vin (0.332557)
	mga (0.32041)
	liv (0.292569)
	lin (0.291206)
	ret (0.257467)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	nje (0.16592)
	cki (0.165235)
	tbr (0.154178)
	hyp (0.142837)
	cst (0.140036)
	ste (0.135208)
	pla (0.133672)
	sug (0.127291)
	clu (0.119646)
	spc (0.113366)