Non-Coding RNA Search

Ss1.1-rsug27_i15.5

Sequence:


               
               CAGGTGGAAAACACAGGTTTGGAAGAAAATTACCACTTCGCAAAGCCAACTTTCTTTTTT
TTTTTTTTGGCCGCACCCTCGGCATGTGCACGTTCCCGGACCAGGGATTGAACCAGTGCC
GTAGTTGTAGCCTACGCCACAGCTGCGGTAATGCTGGCTCCTTAACCCACTGTGCCACAA
GGGAACTCCCAGTTTCTTAAAAGATACTTAATTTAGCTGAAAAATCTAGATAGTTTTTTG
TAAAGGCCTGTATGAAATCTGTATATGTTGTAATAAAGCTTCTTGTGCCAGGAATTTATT
GAAAGTGTTGAAGAAATAAAAATCAACTGACATACTGGTAAAATACTTAAAGGTTGGTCC
TGAGAAGATAATTGTTCTTAATGTTGTCCAGGACACCCTGGTTTGCTTTGTCAAGCCTAG
TGAAAAGGAGCGTGAGCTTTCCGAGCCAGTGAAGGTGCCGCGTGAATGGCCACAGAGGGA
GTGTCCCTTGTCCTGCGGCCAGGAGGTTGGCGACTGAAACATTCACACAGGGCTCTTTGA
TGGACCCATAAAAGCTTCCTCAGGGGGTCAGCAGAGTTGGTGAATCTTAATTTTTTAAAA
ATGTACAACTTTTGTATAAATAATAAAGAACTCCTTATTTTGTATTACATCTGATGCTTC
AAGTGTTGGTCTTGGAAAGCTGATGGCTCCGTAGAAGATGGACTCTGAGACACATTCCAG
TAATGCCCTGGCAGCAGGAGAGCCTCTGAGTGACTGCGTCTGCATTATTGTTGGGGAAGA
CTGGCCTTTTCTGTTGTAGGTCAAGTTTAAATTGCTTCAATTGTGTCTTTTTCCAGTGAC
TTTTTATTTATCTGAATTTTTCATGGAAGTGGCTGTGAAATGTATGTTGAGTCTTCATTT
TGGTGACTGTAACCAATACCATCTTGCTAAACTAATGTTTTGTACAATTACTAAATTGTA
TACATTTTGTTATACTTTCTTCCAGTTCCAGTAAATTATGAAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTGGAAAACACAGGTTTGGAAGAAAATTACCACTTCGCAAAGCCAACTTTCTTTTTT
TTTTTTTTGGCCGCACCCTCGGCATGTGCACGTTCCCGGACCAGGGATTGAACCAGTGCC
GTAGTTGTAGCCTACGCCACAGCTGCGGTAATGCTGGCTCCTTAACCCACTGTGCCACAA
GGGAACTCCCAGTTTCTTAAAAGATACTTAATTTAGCTGAAAAATCTAGATAGTTTTTTG
TAAAGGCCTGTATGAAATCTGTATATGTTGTAATAAAGCTTCTTGTGCCAGGAATTTATT
GAAAGTGTTGAAGAAATAAAAATCAACTGACATACTGGTAAAATACTTAAAGGTTGGTCC
TGAGAAGATAATTGTTCTTAATGTTGTCCAGGACACCCTGGTTTGCTTTGTCAAGCCTAG
TGAAAAGGAGCGTGAGCTTTCCGAGCCAGTGAAGGTGCCGCGTGAATGGCCACAGAGGGA
GTGTCCCTTGTCCTGCGGCCAGGAGGTTGGCGACTGAAACATTCACACAGGGCTCTTTGA
TGGACCCATAAAAGCTTCCTCAGGGGGTCAGCAGAGTTGGTGAATCTTAATTTTTTAAAA
ATGTACAACTTTTGTATAAATAATAAAGAACTCCTTATTTTGTATTACATCTGATGCTTC
AAGTGTTGGTCTTGGAAAGCTGATGGCTCCGTAGAAGATGGACTCTGAGACACATTCCAG
TAATGCCCTGGCAGCAGGAGAGCCTCTGAGTGACTGCGTCTGCATTATTGTTGGGGAAGA
CTGGCCTTTTCTGTTGTAGGTCAAGTTTAAATTGCTTCAATTGTGTCTTTTTCCAGTGAC
TTTTTATTTATCTGAATTTTTCATGGAAGTGGCTGTGAAATGTATGTTGAGTCTTCATTT
TGGTGACTGTAACCAATACCATCTTGCTAAACTAATGTTTTGTACAATTACTAAATTGTA
TACATTTTGTTATACTTTCTTCCAGTTCCAGTAAATTATGAAAAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               425-543, + strand, RNAz p=0.812449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-543, + strand, RNAz p=0.812449

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000859, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000859, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               193-1008, gnl|bosTau2|chr10 (1894457-1893635)
               

               
               193-1008, gnl|Hg17|chr5 (74692862-74693671)
               

               
               193-1008, gnl|Mm7|chr13 (93719156-93718335)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-1008, gnl|bosTau2|chr10 (1894457-1893635)
               

               
               193-1008, gnl|Hg17|chr5 (74692862-74693671)
               

               
               193-1008, gnl|Mm7|chr13 (93719156-93718335)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               fbs (1.05208)
               

               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (1.05208)
               

               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	193-1008, gnl\|bosTau2\|chr10 (1894457-1893635)
	193-1008, gnl\|Hg17\|chr5 (74692862-74693671)
	193-1008, gnl\|Mm7\|chr13 (93719156-93718335)

	fbs (1.05208)
	fhi (0.508733)
	hyp (0.42851)
	fcc (0.39557)
	col (0.390016)
	pla (0.267344)
	sug (0.254582)
	cbe (0.239234)
	ecc (0.23007)
	sto (0.179824)
	ill (0.175593)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	cst (0.140036)
	lyg (0.133103)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)